miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 3' -52.9 NC_006883.1 + 23098 0.77 0.616496
Target:  5'- -uCCUucaaaucCAGGUCCAACUGGUCCcACa -3'
miRNA:   3'- cuGGAu------GUCCAGGUUGACCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 21597 0.83 0.333788
Target:  5'- gGACCUGCuGGUCCucCUGGUCCuGCUg -3'
miRNA:   3'- -CUGGAUGuCCAGGuuGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 21707 0.83 0.341344
Target:  5'- -uCCUGCAGGUCCucCUGGUCCAAgUg -3'
miRNA:   3'- cuGGAUGUCCAGGuuGACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 27224 0.83 0.341344
Target:  5'- -uCCUACAGGUCCAGCaGGUCCuACa -3'
miRNA:   3'- cuGGAUGUCCAGGUUGaCCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 27833 0.83 0.341344
Target:  5'- -uCCUcCAGGUCCAACUGGUCCuACa -3'
miRNA:   3'- cuGGAuGUCCAGGUUGACCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 21665 0.82 0.389231
Target:  5'- -uCCaACAGGUCCAACUGGUCCucCUg -3'
miRNA:   3'- cuGGaUGUCCAGGUUGACCAGGuuGA- -5'
31684 3' -52.9 NC_006883.1 + 26281 0.81 0.39763
Target:  5'- -uCCUACAGGUCCAGCaGGUCCucCUg -3'
miRNA:   3'- cuGGAUGUCCAGGUUGaCCAGGuuGA- -5'
31684 3' -52.9 NC_006883.1 + 26533 0.79 0.497122
Target:  5'- -uCCacCAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGauGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 22914 0.78 0.565895
Target:  5'- gGACCUGCuGGUCCugaUGGUCCAAgUg -3'
miRNA:   3'- -CUGGAUGuCCAGGuugACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 28246 0.83 0.319048
Target:  5'- -uCCgACuGGUCCAACUGGUCCAACa -3'
miRNA:   3'- cuGGaUGuCCAGGUUGACCAGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 23411 0.84 0.300623
Target:  5'- gGACCUGguccugcugguccucCAGGUCCAuCUGGUCCAGCa -3'
miRNA:   3'- -CUGGAU---------------GUCCAGGUuGACCAGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 24688 0.84 0.297863
Target:  5'- -uCCUACAGGUCCAAgUGGUCCAu-- -3'
miRNA:   3'- cuGGAUGUCCAGGUUgACCAGGUuga -5'
31684 3' -52.9 NC_006883.1 + 23656 1.01 0.02882
Target:  5'- -uCCUACAGGUCCAACUGGUCCAACUg -3'
miRNA:   3'- cuGGAUGUCCAGGUUGACCAGGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 21779 0.94 0.080358
Target:  5'- -uCCUACAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGAUGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 26506 0.94 0.080358
Target:  5'- -uCCUGCAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGAUGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 26342 0.86 0.229532
Target:  5'- gGugCaACAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- -CugGaUGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 22869 0.86 0.235154
Target:  5'- gGugCUcCAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- -CugGAuGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 27485 0.85 0.252713
Target:  5'- -uCCcACAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGaUGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 22972 0.85 0.258801
Target:  5'- -uCCUcCAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGAuGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 27994 0.84 0.291048
Target:  5'- -uCCUcCAGGUCCAACUGGUCCAGg- -3'
miRNA:   3'- cuGGAuGUCCAGGUUGACCAGGUUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.