miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 5' -53.6 NC_006883.1 + 23452 0.72 0.864753
Target:  5'- aGGucCUccaGGUCCAGCaGGUCCUcCUGGa -3'
miRNA:   3'- -CCuuGA---CCAGGUUGaCCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 23635 0.67 0.98619
Target:  5'- uGGAucaACaGGUCCAGCaGGUCCUaCaGGu -3'
miRNA:   3'- -CCU---UGaCCAGGUUGaCCAGGAcGaCC- -5'
31684 5' -53.6 NC_006883.1 + 23676 0.97 0.053836
Target:  5'- -cAACUGGUCCGACUGGUUCUGCUGGu -3'
miRNA:   3'- ccUUGACCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 23728 0.7 0.916806
Target:  5'- aGGAccuGCUGGaCCuGgaGGaCCUGCUGGa -3'
miRNA:   3'- -CCU---UGACCaGGuUgaCCaGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 24717 0.7 0.916806
Target:  5'- -cAAgUGGUCCAAgUGGUCCUaGC-GGu -3'
miRNA:   3'- ccUUgACCAGGUUgACCAGGA-CGaCC- -5'
31684 5' -53.6 NC_006883.1 + 26278 0.74 0.754666
Target:  5'- aGGuccuACaGGUCCAGCaGGUCCUcCUGGa -3'
miRNA:   3'- -CCu---UGaCCAGGUUGaCCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 26346 0.94 0.077773
Target:  5'- -cAACaGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- ccUUGaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26380 0.87 0.208397
Target:  5'- uGGAACUGGUCCAACUGGUCCa----- -3'
miRNA:   3'- -CCUUGACCAGGUUGACCAGGacgacc -5'
31684 5' -53.6 NC_006883.1 + 26425 0.8 0.481313
Target:  5'- uGGAACUgguacuccaGGUCCAGCaGGUCCUcCUGGa -3'
miRNA:   3'- -CCUUGA---------CCAGGUUGaCCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 26467 0.7 0.932649
Target:  5'- uGGAGCagaUGGaaguaaUGGUCCUGCUGGu -3'
miRNA:   3'- -CCUUG---ACCagguugACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26503 0.94 0.071908
Target:  5'- uGGuccuGCaGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCu---UGaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26539 0.92 0.106123
Target:  5'- -----aGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- ccuugaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26554 0.68 0.970999
Target:  5'- aGGAccuGCUGGaCCugUaGGaCCUGCUGGa -3'
miRNA:   3'- -CCU---UGACCaGGuuGaCCaGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26587 0.7 0.922315
Target:  5'- uGGAACUucaGcUCCAuCUGGUCCuucaacUGCUGGu -3'
miRNA:   3'- -CCUUGA---CcAGGUuGACCAGG------ACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26707 0.66 0.987727
Target:  5'- aGGuccuGCUGGUUCucCaGGUCCUcCUGGu -3'
miRNA:   3'- -CCu---UGACCAGGuuGaCCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 27284 0.67 0.98451
Target:  5'- -----aGGUCCAGgUGGUCCaGgUGGu -3'
miRNA:   3'- ccuugaCCAGGUUgACCAGGaCgACC- -5'
31684 5' -53.6 NC_006883.1 + 27305 0.66 0.987727
Target:  5'- uGGcACaGGUCCAGCaGGUCCUccagguccucCUGGa -3'
miRNA:   3'- -CCuUGaCCAGGUUGaCCAGGAc---------GACC- -5'
31684 5' -53.6 NC_006883.1 + 27368 0.7 0.916806
Target:  5'- uGGAACUgguacuccaGGUCCAGCaGGUCCUccagguccucCUGGa -3'
miRNA:   3'- -CCUUGA---------CCAGGUUGaCCAGGAc---------GACC- -5'
31684 5' -53.6 NC_006883.1 + 27446 0.66 0.989128
Target:  5'- aGGuccuACUGGUCCGACaGGUCCc----- -3'
miRNA:   3'- -CCu---UGACCAGGUUGaCCAGGacgacc -5'
31684 5' -53.6 NC_006883.1 + 27473 0.94 0.077773
Target:  5'- aGGAccaacuggucccACaGGUCCAACUGGUCCUGCUGGa -3'
miRNA:   3'- -CCU------------UGaCCAGGUUGACCAGGACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.