miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 5' -53.6 NC_006883.1 + 21446 0.9 0.1369
Target:  5'- cGGuGgUGGUCCuACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCuUgACCAGGuUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21484 0.72 0.857299
Target:  5'- -cAACUGGaaUAACUGGUCCUuCUGGu -3'
miRNA:   3'- ccUUGACCagGUUGACCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 21515 0.85 0.246231
Target:  5'- aGGuccuuCUGGUCCAGguggcggucCUGGUCCUGCUGGc -3'
miRNA:   3'- -CCuu---GACCAGGUU---------GACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21596 0.95 0.070049
Target:  5'- uGGAccuGCUGGUCCucCUGGUCCUGCUGGu -3'
miRNA:   3'- -CCU---UGACCAGGuuGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21667 0.82 0.385417
Target:  5'- -cAACaGGUCCAACUGGUCCUcCUGGu -3'
miRNA:   3'- ccUUGaCCAGGUUGACCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 21695 0.74 0.791228
Target:  5'- uGGAucucCUGGUCCuGCaGGUCCUcCUGGu -3'
miRNA:   3'- -CCUu---GACCAGGuUGaCCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 21734 1.02 0.025522
Target:  5'- aGGucCUGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCuuGACCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21776 0.94 0.071908
Target:  5'- cGGuccuACaGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCu---UGaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21815 0.66 0.990402
Target:  5'- aGGuccucCUGGUCCAAgUGGUCCUc---- -3'
miRNA:   3'- -CCuu---GACCAGGUUgACCAGGAcgacc -5'
31684 5' -53.6 NC_006883.1 + 21842 0.73 0.833797
Target:  5'- -----aGGUCCGAgugguggagaUGGUCCUGCUGGu -3'
miRNA:   3'- ccuugaCCAGGUUg---------ACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21928 0.74 0.754666
Target:  5'- ----gUGGUCC---UGGUCCUGCUGGu -3'
miRNA:   3'- ccuugACCAGGuugACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21966 0.86 0.240496
Target:  5'- -cAAgUGGUCCucCUGGUCCUGCUGGa -3'
miRNA:   3'- ccUUgACCAGGuuGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 22868 0.95 0.064746
Target:  5'- aGGuGCUccaGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCuUGA---CCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 22909 0.74 0.791228
Target:  5'- -uAACUGGaCCuGCUGGUCCUGaUGGu -3'
miRNA:   3'- ccUUGACCaGGuUGACCAGGACgACC- -5'
31684 5' -53.6 NC_006883.1 + 22940 0.84 0.296246
Target:  5'- uGGuccucCUGGUCCc-CUGGUCCUGCUGGu -3'
miRNA:   3'- -CCuu---GACCAGGuuGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 22978 0.92 0.106123
Target:  5'- -----aGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- ccuugaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 23046 0.82 0.369382
Target:  5'- -cAACUGGUCCucaaGGUCCUGCUGGu -3'
miRNA:   3'- ccUUGACCAGGuugaCCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 23077 0.8 0.453954
Target:  5'- -----aGGUCCAACUGGUCCUGUaGGu -3'
miRNA:   3'- ccuugaCCAGGUUGACCAGGACGaCC- -5'
31684 5' -53.6 NC_006883.1 + 23398 0.79 0.49061
Target:  5'- uGGuGCUGGUggUgGAcCUGGUCCUGCUGGu -3'
miRNA:   3'- -CCuUGACCA--GgUU-GACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 23413 0.72 0.857299
Target:  5'- aGGAccauCUGGUCCAGUUGGaCCUGUgGGa -3'
miRNA:   3'- -CCUu---GACCAGGUUGACCaGGACGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.