miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 5' -53.6 NC_006883.1 + 27896 1.12 0.005476
Target:  5'- uGGAACUGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCUUGACCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 27949 1.12 0.00594
Target:  5'- uGGAACUGGUCCGACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCUUGACCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21734 1.02 0.025522
Target:  5'- aGGucCUGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCuuGACCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 28018 1.01 0.029975
Target:  5'- cGGAACUGGUCCAACUGGUCCUaCUGGu -3'
miRNA:   3'- -CCUUGACCAGGUUGACCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 23676 0.97 0.053836
Target:  5'- -cAACUGGUCCGACUGGUUCUGCUGGu -3'
miRNA:   3'- ccUUGACCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 222698 0.95 0.063065
Target:  5'- uGGAACUGGUCCAcaagguucacCUGGUCCUGCUGGu -3'
miRNA:   3'- -CCUUGACCAGGUu---------GACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 22868 0.95 0.064746
Target:  5'- aGGuGCUccaGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCuUGA---CCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 28237 0.95 0.070049
Target:  5'- uGGAACUGGUCCGACUGGUCCaaCUGGu -3'
miRNA:   3'- -CCUUGACCAGGUUGACCAGGacGACC- -5'
31684 5' -53.6 NC_006883.1 + 21596 0.95 0.070049
Target:  5'- uGGAccuGCUGGUCCucCUGGUCCUGCUGGu -3'
miRNA:   3'- -CCU---UGACCAGGuuGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26503 0.94 0.071908
Target:  5'- uGGuccuGCaGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCu---UGaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21776 0.94 0.071908
Target:  5'- cGGuccuACaGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCu---UGaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26346 0.94 0.077773
Target:  5'- -cAACaGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- ccUUGaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 27473 0.94 0.077773
Target:  5'- aGGAccaacuggucccACaGGUCCAACUGGUCCUGCUGGa -3'
miRNA:   3'- -CCU------------UGaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 22978 0.92 0.106123
Target:  5'- -----aGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- ccuugaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26539 0.92 0.106123
Target:  5'- -----aGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- ccuugaCCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21446 0.9 0.1369
Target:  5'- cGGuGgUGGUCCuACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCuUgACCAGGuUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 222668 0.89 0.14397
Target:  5'- uGGuucucCUGGUCCuGCUGGUCCUGCUGGn -3'
miRNA:   3'- -CCuu---GACCAGGuUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 28078 0.87 0.190964
Target:  5'- cGGAACUGGUCCuGCUGGUCCuccaggaccuccuggUGCUGa -3'
miRNA:   3'- -CCUUGACCAGGuUGACCAGG---------------ACGACc -5'
31684 5' -53.6 NC_006883.1 + 26380 0.87 0.208397
Target:  5'- uGGAACUGGUCCAACUGGUCCa----- -3'
miRNA:   3'- -CCUUGACCAGGUUGACCAGGacgacc -5'
31684 5' -53.6 NC_006883.1 + 21966 0.86 0.240496
Target:  5'- -cAAgUGGUCCucCUGGUCCUGCUGGa -3'
miRNA:   3'- ccUUgACCAGGuuGACCAGGACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.