Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31685 | 3' | -55.8 | NC_006883.1 | + | 23455 | 0.66 | 0.975299 |
Target: 5'- uCCucCaGGUCCaGCaGGUCCUcCUGGa -3' miRNA: 3'- -GGcuGaCCAGGaCGaCCAGGAuGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23656 | 0.67 | 0.953652 |
Target: 5'- uCCuACaGGUCCaaCUGGUCCaACUGGn -3' miRNA: 3'- -GGcUGaCCAGGacGACCAGGaUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23683 | 0.81 | 0.319495 |
Target: 5'- uCCGACUGGUUCUGCUGGU---AUUGGa -3' miRNA: 3'- -GGCUGACCAGGACGACCAggaUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23725 | 0.76 | 0.546131 |
Target: 5'- aCCuGCUGGaCCUGgaGGaCCUGCUGGa -3' miRNA: 3'- -GGcUGACCaGGACgaCCaGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23927 | 0.66 | 0.975299 |
Target: 5'- -gGACcaguUGGaCCUGUaGGaCCUGCUGGa -3' miRNA: 3'- ggCUG----ACCaGGACGaCCaGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26281 | 0.69 | 0.904968 |
Target: 5'- uCCuACaGGUCCaGCaGGUCCUcCUGGa -3' miRNA: 3'- -GGcUGaCCAGGaCGaCCAGGAuGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26353 | 0.85 | 0.202274 |
Target: 5'- uCCaACUGGUCCUGCUGGUCCcACaGGu -3' miRNA: 3'- -GGcUGACCAGGACGACCAGGaUGaCC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26443 | 0.67 | 0.955152 |
Target: 5'- uCCaGCaGGUCCUccuggaaaugauggaGCagauggaaguaaUGGUCCUGCUGGu -3' miRNA: 3'- -GGcUGaCCAGGA---------------CG------------ACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26498 | 0.85 | 0.188313 |
Target: 5'- gCaACUGGUCCUGCagguccaacUGGUCCUGCUGGu -3' miRNA: 3'- gGcUGACCAGGACG---------ACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26542 | 0.89 | 0.118209 |
Target: 5'- uCCaACUGGUCCUGCUGGUCCccaagguguUGCUGGu -3' miRNA: 3'- -GGcUGACCAGGACGACCAGG---------AUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26551 | 0.74 | 0.662888 |
Target: 5'- aCCuGCUGGaCCUGUaGGaCCUGCUGGa -3' miRNA: 3'- -GGcUGACCaGGACGaCCaGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26707 | 0.68 | 0.927055 |
Target: 5'- -----aGGUCCUGCUgguucuccaGGUCCUcCUGGu -3' miRNA: 3'- ggcugaCCAGGACGA---------CCAGGAuGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27224 | 0.68 | 0.93203 |
Target: 5'- uCCuACaGGUCCaGCaGGUCCUACaGGu -3' miRNA: 3'- -GGcUGaCCAGGaCGaCCAGGAUGaCC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27314 | 0.66 | 0.975299 |
Target: 5'- uCCaGCaGGUCCUcCaGGUCCUcCUGGa -3' miRNA: 3'- -GGcUGaCCAGGAcGaCCAGGAuGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27386 | 0.66 | 0.975299 |
Target: 5'- uCCaGCaGGUCCUcCaGGUCCUcCUGGa -3' miRNA: 3'- -GGcUGaCCAGGAcGaCCAGGAuGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27476 | 0.79 | 0.401405 |
Target: 5'- aCCaACUGGUCCcacagguccaaCUGGUCCUGCUGGa -3' miRNA: 3'- -GGcUGACCAGGac---------GACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27511 | 0.67 | 0.949756 |
Target: 5'- cCUGA-UGGaCCUGUaGGaCCUGCUGGa -3' miRNA: 3'- -GGCUgACCaGGACGaCCaGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27815 | 0.81 | 0.333673 |
Target: 5'- -aGAUUuaGGUCCUGCUGGUCCUccagguccaACUGGu -3' miRNA: 3'- ggCUGA--CCAGGACGACCAGGA---------UGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27860 | 0.69 | 0.904968 |
Target: 5'- aCCuACaGGUCCaaCUGGUCCaACUGGu -3' miRNA: 3'- -GGcUGaCCAGGacGACCAGGaUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27899 | 0.81 | 0.319495 |
Target: 5'- --aACUGGUCCaaCUGGUCCUGCUGGu -3' miRNA: 3'- ggcUGACCAGGacGACCAGGAUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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