miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 3' -55.8 NC_006883.1 + 21455 0.91 0.085147
Target:  5'- uCCuACUGGUCCUGCUGGUCCUccagguccaACUGGa -3'
miRNA:   3'- -GGcUGACCAGGACGACCAGGA---------UGACC- -5'
31685 3' -55.8 NC_006883.1 + 21494 0.68 0.927055
Target:  5'- --aACUGGUCCUuCUGGUCCUcCaGGn -3'
miRNA:   3'- ggcUGACCAGGAcGACCAGGAuGaCC- -5'
31685 3' -55.8 NC_006883.1 + 21518 0.75 0.584689
Target:  5'- uCCuuCUGGUCCaggugGCgguccUGGUCCUGCUGGc -3'
miRNA:   3'- -GGcuGACCAGGa----CG-----ACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21572 0.75 0.613955
Target:  5'- uCCGAgUGGUggUcCUGGUCCUACUGGn -3'
miRNA:   3'- -GGCUgACCAggAcGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21599 0.9 0.091892
Target:  5'- aCCuGCUGGUCCUcCUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcUGACCAGGAcGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21665 0.68 0.93203
Target:  5'- uCCaACaGGUCCaaCUGGUCCUcCUGGu -3'
miRNA:   3'- -GGcUGaCCAGGacGACCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 21693 0.79 0.403043
Target:  5'- aCUGGaucucCUGGUCCUGCaGGUCCUcCUGGu -3'
miRNA:   3'- -GGCU-----GACCAGGACGaCCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 21743 0.94 0.057942
Target:  5'- uCCaACUGGUCCUGCUGGUCCUACgGGu -3'
miRNA:   3'- -GGcUGACCAGGACGACCAGGAUGaCC- -5'
31685 3' -55.8 NC_006883.1 + 21788 0.8 0.371102
Target:  5'- uCCaACUGGUCCUGCUggugguccuccaGGUCCUcCUGGu -3'
miRNA:   3'- -GGcUGACCAGGACGA------------CCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 21845 0.79 0.419653
Target:  5'- uCCGAgugguggagaUGGUCCUGCUGGUCCaAgUGGu -3'
miRNA:   3'- -GGCUg---------ACCAGGACGACCAGGaUgACC- -5'
31685 3' -55.8 NC_006883.1 + 21885 0.67 0.945649
Target:  5'- ---cCUGGUCCUcCaGGUCCUAgUGGu -3'
miRNA:   3'- ggcuGACCAGGAcGaCCAGGAUgACC- -5'
31685 3' -55.8 NC_006883.1 + 21928 0.78 0.436671
Target:  5'- gUGGucCUGGUCCUGCUGGUCCUcCaGGu -3'
miRNA:   3'- gGCU--GACCAGGACGACCAGGAuGaCC- -5'
31685 3' -55.8 NC_006883.1 + 21973 0.84 0.207124
Target:  5'- uCCucCUGGUCCUGCUGGaUCUGCUGGu -3'
miRNA:   3'- -GGcuGACCAGGACGACCaGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 22880 0.82 0.267337
Target:  5'- uCCaACUGGUCCUGCUGGUgCUccagguuuaACUGGa -3'
miRNA:   3'- -GGcUGACCAGGACGACCAgGA---------UGACC- -5'
31685 3' -55.8 NC_006883.1 + 22916 0.74 0.653118
Target:  5'- aCCuGCUGGUCCUGaUGGUCCaAgUGGn -3'
miRNA:   3'- -GGcUGACCAGGACgACCAGGaUgACC- -5'
31685 3' -55.8 NC_006883.1 + 22943 0.8 0.348306
Target:  5'- uCCucCUGGUCCc-CUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcuGACCAGGacGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 22981 0.74 0.682354
Target:  5'- uCCaACUGGUCCUGCUGGUgaUGaUGGu -3'
miRNA:   3'- -GGcUGACCAGGACGACCAggAUgACC- -5'
31685 3' -55.8 NC_006883.1 + 23044 0.79 0.419653
Target:  5'- uCCaACUGGUCCUcaaGGUCCUGCUGGu -3'
miRNA:   3'- -GGcUGACCAGGAcgaCCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 23080 0.78 0.457607
Target:  5'- uCCaACUGGUCCUGUaGGUCCUucaaauccagguccaACUGGu -3'
miRNA:   3'- -GGcUGACCAGGACGaCCAGGA---------------UGACC- -5'
31685 3' -55.8 NC_006883.1 + 23411 0.82 0.299085
Target:  5'- -gGAcCUGGUCCUGCUGGUCCUccagguccauCUGGu -3'
miRNA:   3'- ggCU-GACCAGGACGACCAGGAu---------GACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.