miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 3' -55.8 NC_006883.1 + 27476 0.79 0.401405
Target:  5'- aCCaACUGGUCCcacagguccaaCUGGUCCUGCUGGa -3'
miRNA:   3'- -GGcUGACCAGGac---------GACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 22880 0.82 0.267337
Target:  5'- uCCaACUGGUCCUGCUGGUgCUccagguuuaACUGGa -3'
miRNA:   3'- -GGcUGACCAGGACGACCAgGA---------UGACC- -5'
31685 3' -55.8 NC_006883.1 + 28017 0.82 0.273462
Target:  5'- gCGgaACUGGUCCaaCUGGUCCUACUGGu -3'
miRNA:   3'- gGC--UGACCAGGacGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 23411 0.82 0.299085
Target:  5'- -gGAcCUGGUCCUGCUGGUCCUccagguccauCUGGu -3'
miRNA:   3'- ggCU-GACCAGGACGACCAGGAu---------GACC- -5'
31685 3' -55.8 NC_006883.1 + 27899 0.81 0.319495
Target:  5'- --aACUGGUCCaaCUGGUCCUGCUGGu -3'
miRNA:   3'- ggcUGACCAGGacGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 23683 0.81 0.319495
Target:  5'- uCCGACUGGUUCUGCUGGU---AUUGGa -3'
miRNA:   3'- -GGCUGACCAGGACGACCAggaUGACC- -5'
31685 3' -55.8 NC_006883.1 + 27815 0.81 0.333673
Target:  5'- -aGAUUuaGGUCCUGCUGGUCCUccagguccaACUGGu -3'
miRNA:   3'- ggCUGA--CCAGGACGACCAGGA---------UGACC- -5'
31685 3' -55.8 NC_006883.1 + 22943 0.8 0.348306
Target:  5'- uCCucCUGGUCCc-CUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcuGACCAGGacGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21788 0.8 0.371102
Target:  5'- uCCaACUGGUCCUGCUggugguccuccaGGUCCUcCUGGu -3'
miRNA:   3'- -GGcUGACCAGGACGA------------CCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 28077 0.83 0.243946
Target:  5'- gCGgaACUGGUCCUGCUGGUCCUcCaGGa -3'
miRNA:   3'- gGC--UGACCAGGACGACCAGGAuGaCC- -5'
31685 3' -55.8 NC_006883.1 + 222744 0.84 0.232901
Target:  5'- gCaACUGGUCCUGUuggaaauccUGGUCCUACUGGu -3'
miRNA:   3'- gGcUGACCAGGACG---------ACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21973 0.84 0.207124
Target:  5'- uCCucCUGGUCCUGCUGGaUCUGCUGGu -3'
miRNA:   3'- -GGcuGACCAGGACGACCaGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 222645 0.98 0.03021
Target:  5'- aCuACUGGUCCUGCUGGUCCUACUGGu -3'
miRNA:   3'- gGcUGACCAGGACGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 222671 0.95 0.048332
Target:  5'- uUCucCUGGUCCUGCUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcuGACCAGGACGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21743 0.94 0.057942
Target:  5'- uCCaACUGGUCCUGCUGGUCCUACgGGu -3'
miRNA:   3'- -GGcUGACCAGGACGACCAGGAUGaCC- -5'
31685 3' -55.8 NC_006883.1 + 21455 0.91 0.085147
Target:  5'- uCCuACUGGUCCUGCUGGUCCUccagguccaACUGGa -3'
miRNA:   3'- -GGcUGACCAGGACGACCAGGA---------UGACC- -5'
31685 3' -55.8 NC_006883.1 + 21599 0.9 0.091892
Target:  5'- aCCuGCUGGUCCUcCUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcUGACCAGGAcGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 26542 0.89 0.118209
Target:  5'- uCCaACUGGUCCUGCUGGUCCccaagguguUGCUGGu -3'
miRNA:   3'- -GGcUGACCAGGACGACCAGG---------AUGACC- -5'
31685 3' -55.8 NC_006883.1 + 26498 0.85 0.188313
Target:  5'- gCaACUGGUCCUGCagguccaacUGGUCCUGCUGGu -3'
miRNA:   3'- gGcUGACCAGGACG---------ACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 26353 0.85 0.202274
Target:  5'- uCCaACUGGUCCUGCUGGUCCcACaGGu -3'
miRNA:   3'- -GGcUGACCAGGACGACCAGGaUGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.