Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31685 | 3' | -55.8 | NC_006883.1 | + | 27958 | 1.12 | 0.004155 |
Target: 5'- uCCGACUGGUCCUGCUGGUCCUACUGGu -3' miRNA: 3'- -GGCUGACCAGGACGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 222645 | 0.98 | 0.03021 |
Target: 5'- aCuACUGGUCCUGCUGGUCCUACUGGu -3' miRNA: 3'- gGcUGACCAGGACGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 222671 | 0.95 | 0.048332 |
Target: 5'- uUCucCUGGUCCUGCUGGUCCUGCUGGu -3' miRNA: 3'- -GGcuGACCAGGACGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21743 | 0.94 | 0.057942 |
Target: 5'- uCCaACUGGUCCUGCUGGUCCUACgGGu -3' miRNA: 3'- -GGcUGACCAGGACGACCAGGAUGaCC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21455 | 0.91 | 0.085147 |
Target: 5'- uCCuACUGGUCCUGCUGGUCCUccagguccaACUGGa -3' miRNA: 3'- -GGcUGACCAGGACGACCAGGA---------UGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21599 | 0.9 | 0.091892 |
Target: 5'- aCCuGCUGGUCCUcCUGGUCCUGCUGGu -3' miRNA: 3'- -GGcUGACCAGGAcGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26542 | 0.89 | 0.118209 |
Target: 5'- uCCaACUGGUCCUGCUGGUCCccaagguguUGCUGGu -3' miRNA: 3'- -GGcUGACCAGGACGACCAGG---------AUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26498 | 0.85 | 0.188313 |
Target: 5'- gCaACUGGUCCUGCagguccaacUGGUCCUGCUGGu -3' miRNA: 3'- gGcUGACCAGGACG---------ACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26353 | 0.85 | 0.202274 |
Target: 5'- uCCaACUGGUCCUGCUGGUCCcACaGGu -3' miRNA: 3'- -GGcUGACCAGGACGACCAGGaUGaCC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21973 | 0.84 | 0.207124 |
Target: 5'- uCCucCUGGUCCUGCUGGaUCUGCUGGu -3' miRNA: 3'- -GGcuGACCAGGACGACCaGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 222744 | 0.84 | 0.232901 |
Target: 5'- gCaACUGGUCCUGUuggaaauccUGGUCCUACUGGu -3' miRNA: 3'- gGcUGACCAGGACG---------ACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 28077 | 0.83 | 0.243946 |
Target: 5'- gCGgaACUGGUCCUGCUGGUCCUcCaGGa -3' miRNA: 3'- gGC--UGACCAGGACGACCAGGAuGaCC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 22880 | 0.82 | 0.267337 |
Target: 5'- uCCaACUGGUCCUGCUGGUgCUccagguuuaACUGGa -3' miRNA: 3'- -GGcUGACCAGGACGACCAgGA---------UGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 28017 | 0.82 | 0.273462 |
Target: 5'- gCGgaACUGGUCCaaCUGGUCCUACUGGu -3' miRNA: 3'- gGC--UGACCAGGacGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23411 | 0.82 | 0.299085 |
Target: 5'- -gGAcCUGGUCCUGCUGGUCCUccagguccauCUGGu -3' miRNA: 3'- ggCU-GACCAGGACGACCAGGAu---------GACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23683 | 0.81 | 0.319495 |
Target: 5'- uCCGACUGGUUCUGCUGGU---AUUGGa -3' miRNA: 3'- -GGCUGACCAGGACGACCAggaUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27899 | 0.81 | 0.319495 |
Target: 5'- --aACUGGUCCaaCUGGUCCUGCUGGu -3' miRNA: 3'- ggcUGACCAGGacGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27815 | 0.81 | 0.333673 |
Target: 5'- -aGAUUuaGGUCCUGCUGGUCCUccagguccaACUGGu -3' miRNA: 3'- ggCUGA--CCAGGACGACCAGGA---------UGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 22943 | 0.8 | 0.348306 |
Target: 5'- uCCucCUGGUCCc-CUGGUCCUGCUGGu -3' miRNA: 3'- -GGcuGACCAGGacGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21788 | 0.8 | 0.371102 |
Target: 5'- uCCaACUGGUCCUGCUggugguccuccaGGUCCUcCUGGu -3' miRNA: 3'- -GGcUGACCAGGACGA------------CCAGGAuGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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