miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 5' -57.4 NC_006883.1 + 23156 0.81 0.230871
Target:  5'- gGUCCUaCAGGUCCAcCaGGUCCAGGUa -3'
miRNA:   3'- -CAGGAgGUCCAGGUuGaCCAGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 23419 0.66 0.926989
Target:  5'- -aCCUgUAGGaCCAuCUGGUCCAGu- -3'
miRNA:   3'- caGGAgGUCCaGGUuGACCAGGUCcg -5'
31685 5' -57.4 NC_006883.1 + 23426 0.92 0.048788
Target:  5'- gGUCCUCCAGGUCCAuCUGGUCCAG-Ca -3'
miRNA:   3'- -CAGGAGGUCCAGGUuGACCAGGUCcG- -5'
31685 5' -57.4 NC_006883.1 + 23453 0.87 0.095384
Target:  5'- gGUCCUCCAGGUCCAGCaGGUCCuccuGGa -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGaCCAGGu---CCg -5'
31685 5' -57.4 NC_006883.1 + 23654 0.86 0.113859
Target:  5'- gGUCCUaCAGGUCCAACUGGUCCAacuGGUc -3'
miRNA:   3'- -CAGGAgGUCCAGGUUGACCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 24678 0.8 0.265215
Target:  5'- cUCCUCCAGGUCCuACaGGUCCAaguGGUc -3'
miRNA:   3'- cAGGAGGUCCAGGuUGaCCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 24705 0.75 0.469734
Target:  5'- nUCCaUCAGGUCCAAgUGGUCCAaguGGUc -3'
miRNA:   3'- cAGGaGGUCCAGGUUgACCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 24749 0.83 0.182011
Target:  5'- gGUCCUCCAGGUCCAACaGGagguUCUGGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGaCC----AGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 26279 0.75 0.460784
Target:  5'- gGUCCUaCAGGUCCAGCaGGUCCuccuGGa -3'
miRNA:   3'- -CAGGAgGUCCAGGUUGaCCAGGu---CCg -5'
31685 5' -57.4 NC_006883.1 + 26342 0.75 0.469734
Target:  5'- gGUgCaaCAGGUCCAACUGGUCCugcuGGUc -3'
miRNA:   3'- -CAgGagGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 26370 0.69 0.81008
Target:  5'- nUCC-CaCAgguggaacuGGUCCAACUGGUCCAGa- -3'
miRNA:   3'- cAGGaG-GU---------CCAGGUUGACCAGGUCcg -5'
31685 5' -57.4 NC_006883.1 + 26405 0.88 0.088366
Target:  5'- gGUCCUCCAGGUCCAggugguggaACUGGuacUCCAGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGU---------UGACC---AGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 26504 0.89 0.070147
Target:  5'- gGUCCUgCAGGUCCAACUGGUCCugcuGGUc -3'
miRNA:   3'- -CAGGAgGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 26532 0.85 0.135635
Target:  5'- nUCCaCCAGGUCCAACUGGUCCugcuGGUc -3'
miRNA:   3'- cAGGaGGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 26717 0.8 0.253328
Target:  5'- gGUUCUCCAGGUCCucCUGGUUCuGGUu -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGACCAGGuCCG- -5'
31685 5' -57.4 NC_006883.1 + 27222 0.78 0.33871
Target:  5'- gGUCCUaCAGGUCCAGCaGGUCCuacAGGUc -3'
miRNA:   3'- -CAGGAgGUCCAGGUUGaCCAGG---UCCG- -5'
31685 5' -57.4 NC_006883.1 + 27276 1.01 0.012375
Target:  5'- gGUCCUCCAGGUCCAGgUGGUCCAGGUg -3'
miRNA:   3'- -CAGGAGGUCCAGGUUgACCAGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 27321 0.72 0.631922
Target:  5'- gGUCCUCCAGGUCCucCUGGaaaugauGGUg -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGACCaggu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 27378 0.79 0.290338
Target:  5'- --aCUCCAGGUCCAGCaGGUCCuccAGGUc -3'
miRNA:   3'- cagGAGGUCCAGGUUGaCCAGG---UCCG- -5'
31685 5' -57.4 NC_006883.1 + 27447 0.68 0.834685
Target:  5'- gGUCCUaCuGGUCCGACaGGUCCcacAGGa -3'
miRNA:   3'- -CAGGAgGuCCAGGUUGaCCAGG---UCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.