miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 5' -57.4 NC_006883.1 + 21471 0.83 0.173408
Target:  5'- gGUCCUCCAGGUCCAACUGGaauaaCuGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGACCag---GuCCG- -5'
31685 5' -57.4 NC_006883.1 + 21507 1 0.014513
Target:  5'- gGUCCUCCAGGUCCuuCUGGUCCAGGUg -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGACCAGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 21606 0.82 0.195623
Target:  5'- gGUCCUCCuGGUCCuGCUGGugguccUCCAGGUc -3'
miRNA:   3'- -CAGGAGGuCCAGGuUGACC------AGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 21663 0.85 0.142529
Target:  5'- gGUCCaaCAGGUCCAACUGGUCCuccuGGUa -3'
miRNA:   3'- -CAGGagGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21714 0.79 0.303583
Target:  5'- gGUCCUCCuGGUCCAAguggaggucCUGGUCCAacuGGUc -3'
miRNA:   3'- -CAGGAGGuCCAGGUU---------GACCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21751 0.67 0.892387
Target:  5'- nUCCUgCuGGUCCuACgGGUCCAGa- -3'
miRNA:   3'- cAGGAgGuCCAGGuUGaCCAGGUCcg -5'
31685 5' -57.4 NC_006883.1 + 21777 0.86 0.12276
Target:  5'- gGUCCUaCAGGUCCAACUGGUCCugcuGGUn -3'
miRNA:   3'- -CAGGAgGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21807 0.88 0.086138
Target:  5'- gGUCCUCCAGGUCCucCUGGUCCAaguGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGACCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21835 0.77 0.392675
Target:  5'- nUCCUCCAGGUCCGAgugguggagaUGGUCCugcuGGUc -3'
miRNA:   3'- cAGGAGGUCCAGGUUg---------ACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21888 0.66 0.916329
Target:  5'- gGUCCUCCAGGUCCuAgUGGUn----- -3'
miRNA:   3'- -CAGGAGGUCCAGGuUgACCAgguccg -5'
31685 5' -57.4 NC_006883.1 + 21909 0.85 0.135635
Target:  5'- gGUCCUCCAGGUCCuaguGgUGGUCCuGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGu---UgACCAGGuCCG- -5'
31685 5' -57.4 NC_006883.1 + 21945 0.79 0.303583
Target:  5'- gGUCCUCCAggucagauGGUCCAAgUGGUCCuccuGGUc -3'
miRNA:   3'- -CAGGAGGU--------CCAGGUUgACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 22869 0.9 0.060068
Target:  5'- gGUgCUCCAGGUCCAACUGGUCCugcuGGUg -3'
miRNA:   3'- -CAgGAGGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 22897 0.69 0.81008
Target:  5'- nUgCUCCAGGUUUAACUGGaCCugcuGGUc -3'
miRNA:   3'- cAgGAGGUCCAGGUUGACCaGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 22941 0.78 0.353564
Target:  5'- gGUCCUCCuGGUCCc-CUGGUCCugcuGGUn -3'
miRNA:   3'- -CAGGAGGuCCAGGuuGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 22970 0.99 0.017474
Target:  5'- gGUCCUCCAGGUCCAACUGGUCCugcuGGUg -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 23024 0.86 0.116757
Target:  5'- gGUCCUCCAgguaucgguGGUCCAACUGGUCCucaAGGUc -3'
miRNA:   3'- -CAGGAGGU---------CCAGGUUGACCAGG---UCCG- -5'
31685 5' -57.4 NC_006883.1 + 23069 0.93 0.041709
Target:  5'- gGUUCUCCAGGUCCAACUGGUCCuguAGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGACCAGG---UCCG- -5'
31685 5' -57.4 NC_006883.1 + 23101 0.85 0.142529
Target:  5'- uUCaaaUCCAGGUCCAACUGGUCCcacAGGUc -3'
miRNA:   3'- cAGg--AGGUCCAGGUUGACCAGG---UCCG- -5'
31685 5' -57.4 NC_006883.1 + 23130 0.72 0.631922
Target:  5'- nUCC-CaCAGGUCCAACUGGaCCAGa- -3'
miRNA:   3'- cAGGaG-GUCCAGGUUGACCaGGUCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.