miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 5' -57.4 NC_006883.1 + 23101 0.85 0.142529
Target:  5'- uUCaaaUCCAGGUCCAACUGGUCCcacAGGUc -3'
miRNA:   3'- cAGg--AGGUCCAGGUUGACCAGG---UCCG- -5'
31685 5' -57.4 NC_006883.1 + 26405 0.88 0.088366
Target:  5'- gGUCCUCCAGGUCCAggugguggaACUGGuacUCCAGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGU---------UGACC---AGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 23453 0.87 0.095384
Target:  5'- gGUCCUCCAGGUCCAGCaGGUCCuccuGGa -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGaCCAGGu---CCg -5'
31685 5' -57.4 NC_006883.1 + 23654 0.86 0.113859
Target:  5'- gGUCCUaCAGGUCCAACUGGUCCAacuGGUc -3'
miRNA:   3'- -CAGGAgGUCCAGGUUGACCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 23024 0.86 0.116757
Target:  5'- gGUCCUCCAgguaucgguGGUCCAACUGGUCCucaAGGUc -3'
miRNA:   3'- -CAGGAGGU---------CCAGGUUGACCAGG---UCCG- -5'
31685 5' -57.4 NC_006883.1 + 21777 0.86 0.12276
Target:  5'- gGUCCUaCAGGUCCAACUGGUCCugcuGGUn -3'
miRNA:   3'- -CAGGAgGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21909 0.85 0.135635
Target:  5'- gGUCCUCCAGGUCCuaguGgUGGUCCuGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGu---UgACCAGGuCCG- -5'
31685 5' -57.4 NC_006883.1 + 26532 0.85 0.135635
Target:  5'- nUCCaCCAGGUCCAACUGGUCCugcuGGUc -3'
miRNA:   3'- cAGGaGGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21663 0.85 0.142529
Target:  5'- gGUCCaaCAGGUCCAACUGGUCCuccuGGUa -3'
miRNA:   3'- -CAGGagGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21807 0.88 0.086138
Target:  5'- gGUCCUCCAGGUCCucCUGGUCCAaguGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGACCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 222798 0.89 0.07775
Target:  5'- gGUCCUCCAGGUCCucCUGGUCCugcuGGUg -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 26504 0.89 0.070147
Target:  5'- gGUCCUgCAGGUCCAACUGGUCCugcuGGUc -3'
miRNA:   3'- -CAGGAgGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 27276 1.01 0.012375
Target:  5'- gGUCCUCCAGGUCCAGgUGGUCCAGGUg -3'
miRNA:   3'- -CAGGAGGUCCAGGUUgACCAGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 21507 1 0.014513
Target:  5'- gGUCCUCCAGGUCCuuCUGGUCCAGGUg -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGACCAGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 22970 0.99 0.017474
Target:  5'- gGUCCUCCAGGUCCAACUGGUCCugcuGGUg -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 27831 0.96 0.027392
Target:  5'- gGUCCUCCAGGUCCAACUGGUCCuacAGGa -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGACCAGG---UCCg -5'
31685 5' -57.4 NC_006883.1 + 28052 0.94 0.037559
Target:  5'- gGUCCUCCAGGUCCucCaGGUCCAGGCg -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGaCCAGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 23069 0.93 0.041709
Target:  5'- gGUUCUCCAGGUCCAACUGGUCCuguAGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGACCAGG---UCCG- -5'
31685 5' -57.4 NC_006883.1 + 23426 0.92 0.048788
Target:  5'- gGUCCUCCAGGUCCAuCUGGUCCAG-Ca -3'
miRNA:   3'- -CAGGAGGUCCAGGUuGACCAGGUCcG- -5'
31685 5' -57.4 NC_006883.1 + 22869 0.9 0.060068
Target:  5'- gGUgCUCCAGGUCCAACUGGUCCugcuGGUg -3'
miRNA:   3'- -CAgGAGGUCCAGGUUGACCAGGu---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.