miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31686 3' -49.8 NC_006883.1 + 28418 0.73 0.961549
Target:  5'- aUUUCAaGUUCUGGUGGUgguaCUGGUGGu -3'
miRNA:   3'- gGAGGUcCAAGACUACCAa---GACUACC- -5'
31686 3' -49.8 NC_006883.1 + 40015 0.66 0.999858
Target:  5'- -gUCCAGGUgguaCUGGUGaagaUGGUGGa -3'
miRNA:   3'- ggAGGUCCAa---GACUACcaagACUACC- -5'
31686 3' -49.8 NC_006883.1 + 41479 0.76 0.868837
Target:  5'- uCCUCUuGGUUCUGAaGGUaCUGuAUGGg -3'
miRNA:   3'- -GGAGGuCCAAGACUaCCAaGAC-UACC- -5'
31686 3' -49.8 NC_006883.1 + 90485 0.66 0.999712
Target:  5'- aUCUCCugcuGGUaCUGGUGGUUCUu---- -3'
miRNA:   3'- -GGAGGu---CCAaGACUACCAAGAcuacc -5'
31686 3' -49.8 NC_006883.1 + 111904 0.76 0.876136
Target:  5'- aCUCCAGGUaaUGAUGGUcaaGAUGGa -3'
miRNA:   3'- gGAGGUCCAagACUACCAagaCUACC- -5'
31686 3' -49.8 NC_006883.1 + 112101 0.67 0.999448
Target:  5'- uUCUgCuGGUggUGGUGGagCUGGUGGa -3'
miRNA:   3'- -GGAgGuCCAagACUACCaaGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 112298 0.7 0.989417
Target:  5'- -gUCCAgcugaugguGGUaCUGGUGGaUCUGGUGGu -3'
miRNA:   3'- ggAGGU---------CCAaGACUACCaAGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 186867 0.66 0.999712
Target:  5'- gUUUCAGGUgCUGAUGGagcaUCUGGUa- -3'
miRNA:   3'- gGAGGUCCAaGACUACCa---AGACUAcc -5'
31686 3' -49.8 NC_006883.1 + 222671 0.72 0.971037
Target:  5'- uUCUCCuGGUcCUGcUGGUccugCUGGUGGa -3'
miRNA:   3'- -GGAGGuCCAaGACuACCAa---GACUACC- -5'
31686 3' -49.8 NC_006883.1 + 222800 0.75 0.896709
Target:  5'- uCCUCCAGGUcCUccUGGUccugCUGGUGGu -3'
miRNA:   3'- -GGAGGUCCAaGAcuACCAa---GACUACC- -5'
31686 3' -49.8 NC_006883.1 + 226063 0.67 0.999155
Target:  5'- gCUgUAGGUUCUGAUgcaggaaGGUauuuaaCUGGUGGa -3'
miRNA:   3'- gGAgGUCCAAGACUA-------CCAa-----GACUACC- -5'
31686 3' -49.8 NC_006883.1 + 234373 0.66 0.99982
Target:  5'- aUUUgGGGUgCUGGUGGUggagCUGGaaUGGg -3'
miRNA:   3'- gGAGgUCCAaGACUACCAa---GACU--ACC- -5'
31686 3' -49.8 NC_006883.1 + 243774 0.68 0.998784
Target:  5'- aCUCUAGG-UUUGAUGGUaaugUUGGUGu -3'
miRNA:   3'- gGAGGUCCaAGACUACCAa---GACUACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.