Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31686 | 3' | -49.8 | NC_006883.1 | + | 21509 | 0.72 | 0.979612 |
Target: 5'- uCCUCCAGGUccuUCUGGuccagguggcgguccUGGUcCUGcUGGc -3' miRNA: 3'- -GGAGGUCCA---AGACU---------------ACCAaGACuACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 21836 | 0.69 | 0.995364 |
Target: 5'- uCCUCCAGGUcCgaGUGGUggaGAUGGu -3' miRNA: 3'- -GGAGGUCCAaGacUACCAagaCUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 21911 | 0.71 | 0.984771 |
Target: 5'- uCCUCCAGGUcCuagUGGUGGUcCUGGUc- -3' miRNA: 3'- -GGAGGUCCAaG---ACUACCAaGACUAcc -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 21947 | 0.67 | 0.999448 |
Target: 5'- uCCUCCAGG-UCaGAUGGUcCaaGUGGn -3' miRNA: 3'- -GGAGGUCCaAGaCUACCAaGacUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 21973 | 0.69 | 0.994629 |
Target: 5'- uCCUCCuGGUcCUGcUGGaUCUGcUGGu -3' miRNA: 3'- -GGAGGuCCAaGACuACCaAGACuACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 22899 | 0.77 | 0.853609 |
Target: 5'- gCUCCAGGUUuaacuggacCUGcUGGUcCUGAUGGu -3' miRNA: 3'- gGAGGUCCAA---------GACuACCAaGACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 22972 | 0.72 | 0.978715 |
Target: 5'- uCCUCCAGGUccaaCUGGuccugcUGGUgaUGAUGGu -3' miRNA: 3'- -GGAGGUCCAa---GACU------ACCAagACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 23026 | 0.67 | 0.999322 |
Target: 5'- uCCUCCAGGUaUC-GGUGGUccaaCUGGUc- -3' miRNA: 3'- -GGAGGUCCA-AGaCUACCAa---GACUAcc -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 23455 | 0.7 | 0.99069 |
Target: 5'- uCCUCCAGGUccagcaggUCcuccUGGaUCUGGUGGu -3' miRNA: 3'- -GGAGGUCCA--------AGacu-ACCaAGACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 24751 | 0.68 | 0.998538 |
Target: 5'- uCCUCCAGGUcCaacagGA-GGUUCUGGg-- -3' miRNA: 3'- -GGAGGUCCAaGa----CUaCCAAGACUacc -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 26407 | 0.71 | 0.98292 |
Target: 5'- uCCUCCAGGUcCaGGUGGUggaaCUGGUa- -3' miRNA: 3'- -GGAGGUCCAaGaCUACCAa---GACUAcc -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 26452 | 0.67 | 0.998994 |
Target: 5'- uCCUCCuGGaaaUGAUGGagCaGAUGGa -3' miRNA: 3'- -GGAGGuCCaagACUACCaaGaCUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 26719 | 0.72 | 0.973789 |
Target: 5'- uUCUCCAGGUcCUccUGGUUCUGGUu- -3' miRNA: 3'- -GGAGGUCCAaGAcuACCAAGACUAcc -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 27278 | 0.74 | 0.92637 |
Target: 5'- uCCUCCAGGUcCaGGUGGUcCaGGUGGu -3' miRNA: 3'- -GGAGGUCCAaGaCUACCAaGaCUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 27323 | 0.89 | 0.299886 |
Target: 5'- uCCUCCAGGuccuccuggaaaugaUggugCUGAUGGUUCUGAUGGu -3' miRNA: 3'- -GGAGGUCC---------------Aa---GACUACCAAGACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 27395 | 0.84 | 0.486413 |
Target: 5'- uCCUCCAGGUccUCcuggaaaUGAUGGUgCUGAUGGa -3' miRNA: 3'- -GGAGGUCCA--AG-------ACUACCAaGACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 28063 | 0.67 | 0.999553 |
Target: 5'- uCCUCCAGGUccaggCgGAacUGGUcCUGcUGGu -3' miRNA: 3'- -GGAGGUCCAa----GaCU--ACCAaGACuACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 28105 | 0.75 | 0.915215 |
Target: 5'- aCCUCCuGGUgCUGAcGGUgaUGAUGGg -3' miRNA: 3'- -GGAGGuCCAaGACUaCCAagACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 28150 | 1.14 | 0.010861 |
Target: 5'- uCCUCCAGGUUCUGAUGGUUCUGAUGGa -3' miRNA: 3'- -GGAGGUCCAAGACUACCAAGACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 28195 | 0.74 | 0.93159 |
Target: 5'- aCCUCCAGGUccuaCUGGUGGa---GAUGGu -3' miRNA: 3'- -GGAGGUCCAa---GACUACCaagaCUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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