miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31686 3' -49.8 NC_006883.1 + 28150 1.14 0.010861
Target:  5'- uCCUCCAGGUUCUGAUGGUUCUGAUGGa -3'
miRNA:   3'- -GGAGGUCCAAGACUACCAAGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 27323 0.89 0.299886
Target:  5'- uCCUCCAGGuccuccuggaaaugaUggugCUGAUGGUUCUGAUGGu -3'
miRNA:   3'- -GGAGGUCC---------------Aa---GACUACCAAGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 27395 0.84 0.486413
Target:  5'- uCCUCCAGGUccUCcuggaaaUGAUGGUgCUGAUGGa -3'
miRNA:   3'- -GGAGGUCCA--AG-------ACUACCAaGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 22899 0.77 0.853609
Target:  5'- gCUCCAGGUUuaacuggacCUGcUGGUcCUGAUGGu -3'
miRNA:   3'- gGAGGUCCAA---------GACuACCAaGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 41479 0.76 0.868837
Target:  5'- uCCUCUuGGUUCUGAaGGUaCUGuAUGGg -3'
miRNA:   3'- -GGAGGuCCAAGACUaCCAaGAC-UACC- -5'
31686 3' -49.8 NC_006883.1 + 111904 0.76 0.876136
Target:  5'- aCUCCAGGUaaUGAUGGUcaaGAUGGa -3'
miRNA:   3'- gGAGGUCCAagACUACCAagaCUACC- -5'
31686 3' -49.8 NC_006883.1 + 222800 0.75 0.896709
Target:  5'- uCCUCCAGGUcCUccUGGUccugCUGGUGGu -3'
miRNA:   3'- -GGAGGUCCAaGAcuACCAa---GACUACC- -5'
31686 3' -49.8 NC_006883.1 + 28105 0.75 0.915215
Target:  5'- aCCUCCuGGUgCUGAcGGUgaUGAUGGg -3'
miRNA:   3'- -GGAGGuCCAaGACUaCCAagACUACC- -5'
31686 3' -49.8 NC_006883.1 + 27278 0.74 0.92637
Target:  5'- uCCUCCAGGUcCaGGUGGUcCaGGUGGu -3'
miRNA:   3'- -GGAGGUCCAaGaCUACCAaGaCUACC- -5'
31686 3' -49.8 NC_006883.1 + 28195 0.74 0.93159
Target:  5'- aCCUCCAGGUccuaCUGGUGGa---GAUGGu -3'
miRNA:   3'- -GGAGGUCCAa---GACUACCaagaCUACC- -5'
31686 3' -49.8 NC_006883.1 + 28418 0.73 0.961549
Target:  5'- aUUUCAaGUUCUGGUGGUgguaCUGGUGGu -3'
miRNA:   3'- gGAGGUcCAAGACUACCAa---GACUACC- -5'
31686 3' -49.8 NC_006883.1 + 222671 0.72 0.971037
Target:  5'- uUCUCCuGGUcCUGcUGGUccugCUGGUGGa -3'
miRNA:   3'- -GGAGGuCCAaGACuACCAa---GACUACC- -5'
31686 3' -49.8 NC_006883.1 + 26719 0.72 0.973789
Target:  5'- uUCUCCAGGUcCUccUGGUUCUGGUu- -3'
miRNA:   3'- -GGAGGUCCAaGAcuACCAAGACUAcc -5'
31686 3' -49.8 NC_006883.1 + 22972 0.72 0.978715
Target:  5'- uCCUCCAGGUccaaCUGGuccugcUGGUgaUGAUGGu -3'
miRNA:   3'- -GGAGGUCCAa---GACU------ACCAagACUACC- -5'
31686 3' -49.8 NC_006883.1 + 21509 0.72 0.979612
Target:  5'- uCCUCCAGGUccuUCUGGuccagguggcgguccUGGUcCUGcUGGc -3'
miRNA:   3'- -GGAGGUCCA---AGACU---------------ACCAaGACuACC- -5'
31686 3' -49.8 NC_006883.1 + 26407 0.71 0.98292
Target:  5'- uCCUCCAGGUcCaGGUGGUggaaCUGGUa- -3'
miRNA:   3'- -GGAGGUCCAaGaCUACCAa---GACUAcc -5'
31686 3' -49.8 NC_006883.1 + 21911 0.71 0.984771
Target:  5'- uCCUCCAGGUcCuagUGGUGGUcCUGGUc- -3'
miRNA:   3'- -GGAGGUCCAaG---ACUACCAaGACUAcc -5'
31686 3' -49.8 NC_006883.1 + 112298 0.7 0.989417
Target:  5'- -gUCCAgcugaugguGGUaCUGGUGGaUCUGGUGGu -3'
miRNA:   3'- ggAGGU---------CCAaGACUACCaAGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 23455 0.7 0.99069
Target:  5'- uCCUCCAGGUccagcaggUCcuccUGGaUCUGGUGGu -3'
miRNA:   3'- -GGAGGUCCA--------AGacu-ACCaAGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 21973 0.69 0.994629
Target:  5'- uCCUCCuGGUcCUGcUGGaUCUGcUGGu -3'
miRNA:   3'- -GGAGGuCCAaGACuACCaAGACuACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.