Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31686 | 5' | -58.1 | NC_006883.1 | + | 26717 | 0.76 | 0.397848 |
Target: 5'- gGUUCUCCAGGuCCUCCuGGUUCUGg- -3' miRNA: 3'- -CAGGAGGUCCuGGAGGuCCAGGAUga -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 27204 | 0.75 | 0.431287 |
Target: 5'- gGUCCgcaAGGugCUCCuGGUCCUACa -3' miRNA: 3'- -CAGGaggUCCugGAGGuCCAGGAUGa -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 23024 | 0.75 | 0.456533 |
Target: 5'- gGUCCUCCAGGuaucggugguccaACUggUCCucaAGGUCCUGCUg -3' miRNA: 3'- -CAGGAGGUCC-------------UGG--AGG---UCCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 24678 | 0.74 | 0.475302 |
Target: 5'- cUCCUCCAGGuCCUaCAGGUCCa--- -3' miRNA: 3'- cAGGAGGUCCuGGAgGUCCAGGauga -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 22887 | 0.74 | 0.484373 |
Target: 5'- gGUCCUgCuGGugCUCCAGGUuuaacuggaCCUGCUg -3' miRNA: 3'- -CAGGAgGuCCugGAGGUCCA---------GGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 21606 | 0.74 | 0.489856 |
Target: 5'- gGUCCUCCugguccugcugguGGuCCUCCAGGUCC-GCa -3' miRNA: 3'- -CAGGAGGu------------CCuGGAGGUCCAGGaUGa -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 23417 | 0.74 | 0.493527 |
Target: 5'- gGUCCUgCuGGuCCUCCAGGUCCa--- -3' miRNA: 3'- -CAGGAgGuCCuGGAGGUCCAGGauga -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 27240 | 0.74 | 0.493527 |
Target: 5'- gGUCCUaCAGGuCCaUCAGGUCCUACa -3' miRNA: 3'- -CAGGAgGUCCuGGaGGUCCAGGAUGa -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 222669 | 0.74 | 0.521443 |
Target: 5'- gGUUCUCCuGGuCCUgCuGGUCCUGCUg -3' miRNA: 3'- -CAGGAGGuCCuGGAgGuCCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 26405 | 0.73 | 0.548993 |
Target: 5'- gGUCCUCCAGGuccaggugguggaACugguaCUCCAGGUCCaGCa -3' miRNA: 3'- -CAGGAGGUCC-------------UG-----GAGGUCCAGGaUGa -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 21834 | 0.72 | 0.576009 |
Target: 5'- gGUCCUCCAGGuCCgagugguggagauGGUCCUGCUg -3' miRNA: 3'- -CAGGAGGUCCuGGaggu---------CCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 27885 | 0.72 | 0.578923 |
Target: 5'- gGUCCUUCAGGuggaACUggUCCAacuGGUCCUGCUg -3' miRNA: 3'- -CAGGAGGUCC----UGG--AGGU---CCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 21714 | 0.71 | 0.641566 |
Target: 5'- gGUCCUCCuGGuCCaaguggagguccuggUCCAacuGGUCCUGCUg -3' miRNA: 3'- -CAGGAGGuCCuGG---------------AGGU---CCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 26504 | 0.71 | 0.647452 |
Target: 5'- gGUCCUgCAGGuCCaaCuGGUCCUGCUg -3' miRNA: 3'- -CAGGAgGUCCuGGagGuCCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 27992 | 0.71 | 0.647452 |
Target: 5'- gGUCCUCCAGGuccaacugguCCaggcggaacuggUCCAacuGGUCCUACUg -3' miRNA: 3'- -CAGGAGGUCCu---------GG------------AGGU---CCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 21265 | 0.71 | 0.667035 |
Target: 5'- aUCCUUCGGGACaUCCAGGcaUCgCUGCa -3' miRNA: 3'- cAGGAGGUCCUGgAGGUCC--AG-GAUGa -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 27465 | 0.7 | 0.700054 |
Target: 5'- gGUCC-CaCAGGACCaacuggucccacaggUCCAacuGGUCCUGCUg -3' miRNA: 3'- -CAGGaG-GUCCUGG---------------AGGU---CCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 23087 | 0.7 | 0.715401 |
Target: 5'- gGUCCUgUAGGuCCuucaaaUCCAGGUCCaACUg -3' miRNA: 3'- -CAGGAgGUCCuGG------AGGUCCAGGaUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 26531 | 0.7 | 0.734346 |
Target: 5'- gGUCCaCCAGGuCCaaCuGGUCCUGCUg -3' miRNA: 3'- -CAGGaGGUCCuGGagGuCCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 211470 | 0.69 | 0.762131 |
Target: 5'- gGUCCUCCAGGAUaagCUCCA--UCCUGu- -3' miRNA: 3'- -CAGGAGGUCCUG---GAGGUccAGGAUga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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