miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31686 5' -58.1 NC_006883.1 + 21265 0.71 0.667035
Target:  5'- aUCCUUCGGGACaUCCAGGcaUCgCUGCa -3'
miRNA:   3'- cAGGAGGUCCUGgAGGUCC--AG-GAUGa -5'
31686 5' -58.1 NC_006883.1 + 21462 0.77 0.328979
Target:  5'- gGUCCUgCuGGuCCUCCAGGUCCaACUg -3'
miRNA:   3'- -CAGGAgGuCCuGGAGGUCCAGGaUGA- -5'
31686 5' -58.1 NC_006883.1 + 21498 0.8 0.223894
Target:  5'- gGUCCUUCuGGuCCUCCAGGUCCUuCUg -3'
miRNA:   3'- -CAGGAGGuCCuGGAGGUCCAGGAuGA- -5'
31686 5' -58.1 NC_006883.1 + 21606 0.74 0.489856
Target:  5'- gGUCCUCCugguccugcugguGGuCCUCCAGGUCC-GCa -3'
miRNA:   3'- -CAGGAGGu------------CCuGGAGGUCCAGGaUGa -5'
31686 5' -58.1 NC_006883.1 + 21681 0.83 0.160085
Target:  5'- gGUCCUCCugguacuGGAUCUCCuGGUCCUGCa -3'
miRNA:   3'- -CAGGAGGu------CCUGGAGGuCCAGGAUGa -5'
31686 5' -58.1 NC_006883.1 + 21714 0.71 0.641566
Target:  5'- gGUCCUCCuGGuCCaaguggagguccuggUCCAacuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGuCCuGG---------------AGGU---CCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 21777 0.68 0.838916
Target:  5'- gGUCCUaCAGGuCCaaCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAgGUCCuGGagGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 21807 0.82 0.176429
Target:  5'- gGUCCUCCAGGuCCUCCuGGUCCa--- -3'
miRNA:   3'- -CAGGAGGUCCuGGAGGuCCAGGauga -5'
31686 5' -58.1 NC_006883.1 + 21834 0.72 0.576009
Target:  5'- gGUCCUCCAGGuCCgagugguggagauGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGUCCuGGaggu---------CCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 21888 0.85 0.114861
Target:  5'- gGUCCUCCAGGuccuaguggugguCCUCCAGGUCCUAgUg -3'
miRNA:   3'- -CAGGAGGUCCu------------GGAGGUCCAGGAUgA- -5'
31686 5' -58.1 NC_006883.1 + 21945 0.79 0.277996
Target:  5'- gGUCCUCCAGGucAgaugguccaagugguCCUCCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGUCC--U---------------GGAGGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 21994 0.66 0.895681
Target:  5'- ----aCCAGGACCUCCacuuggaccaggAGGaCCUGCa -3'
miRNA:   3'- caggaGGUCCUGGAGG------------UCCaGGAUGa -5'
31686 5' -58.1 NC_006883.1 + 22858 0.82 0.18074
Target:  5'- uUCCcgaUCCAGGugCUCCAGGUCCaACUg -3'
miRNA:   3'- cAGG---AGGUCCugGAGGUCCAGGaUGA- -5'
31686 5' -58.1 NC_006883.1 + 22887 0.74 0.484373
Target:  5'- gGUCCUgCuGGugCUCCAGGUuuaacuggaCCUGCUg -3'
miRNA:   3'- -CAGGAgGuCCugGAGGUCCA---------GGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 22941 0.78 0.308065
Target:  5'- gGUCCUCCuGGuCC-CCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGuCCuGGaGGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 22970 0.79 0.257309
Target:  5'- gGUCCUCCAGGuCCaaCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGUCCuGGagGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 23024 0.75 0.456533
Target:  5'- gGUCCUCCAGGuaucggugguccaACUggUCCucaAGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGUCC-------------UGG--AGG---UCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 23087 0.7 0.715401
Target:  5'- gGUCCUgUAGGuCCuucaaaUCCAGGUCCaACUg -3'
miRNA:   3'- -CAGGAgGUCCuGG------AGGUCCAGGaUGA- -5'
31686 5' -58.1 NC_006883.1 + 23156 0.67 0.846676
Target:  5'- gGUCCUaCAGGuCCaCCAGGUCCa--- -3'
miRNA:   3'- -CAGGAgGUCCuGGaGGUCCAGGauga -5'
31686 5' -58.1 NC_006883.1 + 23185 0.66 0.901867
Target:  5'- -aCCaUCAGGACCagCAGGUCCa--- -3'
miRNA:   3'- caGGaGGUCCUGGagGUCCAGGauga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.