miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31686 5' -58.1 NC_006883.1 + 26717 0.76 0.397848
Target:  5'- gGUUCUCCAGGuCCUCCuGGUUCUGg- -3'
miRNA:   3'- -CAGGAGGUCCuGGAGGuCCAGGAUga -5'
31686 5' -58.1 NC_006883.1 + 27384 0.8 0.240117
Target:  5'- gGUCCagCAGGuCCUCCAGGUCCUcCUg -3'
miRNA:   3'- -CAGGagGUCCuGGAGGUCCAGGAuGA- -5'
31686 5' -58.1 NC_006883.1 + 23453 0.8 0.240117
Target:  5'- gGUCCUCCAGGuCCagCAGGUCCUcCUg -3'
miRNA:   3'- -CAGGAGGUCCuGGagGUCCAGGAuGA- -5'
31686 5' -58.1 NC_006883.1 + 22970 0.79 0.257309
Target:  5'- gGUCCUCCAGGuCCaaCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGUCCuGGagGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 21945 0.79 0.277996
Target:  5'- gGUCCUCCAGGucAgaugguccaagugguCCUCCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGUCC--U---------------GGAGGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 22941 0.78 0.308065
Target:  5'- gGUCCUCCuGGuCC-CCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGuCCuGGaGGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 27831 0.78 0.314921
Target:  5'- gGUCCUCCAGGuCCaaCuGGUCCUACa -3'
miRNA:   3'- -CAGGAGGUCCuGGagGuCCAGGAUGa -5'
31686 5' -58.1 NC_006883.1 + 21462 0.77 0.328979
Target:  5'- gGUCCUgCuGGuCCUCCAGGUCCaACUg -3'
miRNA:   3'- -CAGGAgGuCCuGGAGGUCCAGGaUGA- -5'
31686 5' -58.1 NC_006883.1 + 28271 0.77 0.366119
Target:  5'- gGUCCUUCAGGuggaagugguCCUCCAGGUCCa--- -3'
miRNA:   3'- -CAGGAGGUCCu---------GGAGGUCCAGGauga -5'
31686 5' -58.1 NC_006883.1 + 27312 0.8 0.240117
Target:  5'- gGUCCagCAGGuCCUCCAGGUCCUcCUg -3'
miRNA:   3'- -CAGGagGUCCuGGAGGUCCAGGAuGA- -5'
31686 5' -58.1 NC_006883.1 + 21498 0.8 0.223894
Target:  5'- gGUCCUUCuGGuCCUCCAGGUCCUuCUg -3'
miRNA:   3'- -CAGGAGGuCCuGGAGGUCCAGGAuGA- -5'
31686 5' -58.1 NC_006883.1 + 22858 0.82 0.18074
Target:  5'- uUCCcgaUCCAGGugCUCCAGGUCCaACUg -3'
miRNA:   3'- cAGG---AGGUCCugGAGGUCCAGGaUGA- -5'
31686 5' -58.1 NC_006883.1 + 222798 0.93 0.03368
Target:  5'- gGUCCUCCAGGuCCUCCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGUCCuGGAGGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 24740 0.91 0.049838
Target:  5'- gGUCCUCCAGGuCCUCCAGGUCCaACa -3'
miRNA:   3'- -CAGGAGGUCCuGGAGGUCCAGGaUGa -5'
31686 5' -58.1 NC_006883.1 + 28052 0.9 0.055294
Target:  5'- gGUCCUCCAGGuCCUCCAGGUCCagGCg -3'
miRNA:   3'- -CAGGAGGUCCuGGAGGUCCAGGa-UGa -5'
31686 5' -58.1 NC_006883.1 + 28139 0.88 0.079321
Target:  5'- gGUCCUCCAGGuCCUCCAGGUUCUGa- -3'
miRNA:   3'- -CAGGAGGUCCuGGAGGUCCAGGAUga -5'
31686 5' -58.1 NC_006883.1 + 28094 0.85 0.113145
Target:  5'- gGUCCUCCAGGACCUCCuGGUgCUGa- -3'
miRNA:   3'- -CAGGAGGUCCUGGAGGuCCAgGAUga -5'
31686 5' -58.1 NC_006883.1 + 21888 0.85 0.114861
Target:  5'- gGUCCUCCAGGuccuaguggugguCCUCCAGGUCCUAgUg -3'
miRNA:   3'- -CAGGAGGUCCu------------GGAGGUCCAGGAUgA- -5'
31686 5' -58.1 NC_006883.1 + 21681 0.83 0.160085
Target:  5'- gGUCCUCCugguacuGGAUCUCCuGGUCCUGCa -3'
miRNA:   3'- -CAGGAGGu------CCUGGAGGuCCAGGAUGa -5'
31686 5' -58.1 NC_006883.1 + 21807 0.82 0.176429
Target:  5'- gGUCCUCCAGGuCCUCCuGGUCCa--- -3'
miRNA:   3'- -CAGGAGGUCCuGGAGGuCCAGGauga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.