miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31688 3' -46.6 NC_006883.1 + 161545 0.66 0.999998
Target:  5'- uUGGUaaaGAaGGUGGUGGUguGAAGGAG-CAa -3'
miRNA:   3'- -ACUA---CUgCUACCACCA--UUUCCUUaGU- -5'
31688 3' -46.6 NC_006883.1 + 212487 0.66 0.999998
Target:  5'- aGAUGAuacUGGUagaGGUGGUAAGGGuAAUa- -3'
miRNA:   3'- aCUACU---GCUA---CCACCAUUUCC-UUAgu -5'
31688 3' -46.6 NC_006883.1 + 112042 0.66 0.999997
Target:  5'- gGA-GAUGGUGGUGGUcAAGGuGGUg- -3'
miRNA:   3'- aCUaCUGCUACCACCAuUUCC-UUAgu -5'
31688 3' -46.6 NC_006883.1 + 40107 0.66 0.999997
Target:  5'- gGA-GAaGGUGGUGGUAAAGGu---- -3'
miRNA:   3'- aCUaCUgCUACCACCAUUUCCuuagu -5'
31688 3' -46.6 NC_006883.1 + 135574 0.66 0.999995
Target:  5'- ----uACGAUGGUGGUauuGAAGaGAUCAu -3'
miRNA:   3'- acuacUGCUACCACCA---UUUCcUUAGU- -5'
31688 3' -46.6 NC_006883.1 + 112398 0.66 0.999995
Target:  5'- cGGUGGCGGUGGUgauaguacuaguGGUGGcguAGGAc--- -3'
miRNA:   3'- aCUACUGCUACCA------------CCAUU---UCCUuagu -5'
31688 3' -46.6 NC_006883.1 + 111968 0.66 0.999995
Target:  5'- gUGGUGGUGGUccaGGUGGUAAacacggugguAGGggUCc -3'
miRNA:   3'- -ACUACUGCUA---CCACCAUU----------UCCuuAGu -5'
31688 3' -46.6 NC_006883.1 + 234137 0.66 0.999993
Target:  5'- gUGGUGGCGGUGGUGGa---------- -3'
miRNA:   3'- -ACUACUGCUACCACCauuuccuuagu -5'
31688 3' -46.6 NC_006883.1 + 12044 0.67 0.999987
Target:  5'- aUGAUGAaggGAuuUGGUGGUAucauAGGAAc-- -3'
miRNA:   3'- -ACUACUg--CU--ACCACCAUu---UCCUUagu -5'
31688 3' -46.6 NC_006883.1 + 111747 0.67 0.999982
Target:  5'- uUGGUGGUGGaGGUGGUGGAGGug-Cu -3'
miRNA:   3'- -ACUACUGCUaCCACCAUUUCCuuaGu -5'
31688 3' -46.6 NC_006883.1 + 236175 0.67 0.999982
Target:  5'- gGGUGcUGGUGGUGGUGcaaauaGAGGAc--- -3'
miRNA:   3'- aCUACuGCUACCACCAU------UUCCUuagu -5'
31688 3' -46.6 NC_006883.1 + 144758 0.67 0.999981
Target:  5'- aGGUGACGAgacacaGGUGGUGcugcuacucgcaaGAGuaGAAUCGa -3'
miRNA:   3'- aCUACUGCUa-----CCACCAU-------------UUC--CUUAGU- -5'
31688 3' -46.6 NC_006883.1 + 159221 0.68 0.999966
Target:  5'- cUGAUG-CGAUGuuuauguaUGGUGGAGGAAcUCAu -3'
miRNA:   3'- -ACUACuGCUACc-------ACCAUUUCCUU-AGU- -5'
31688 3' -46.6 NC_006883.1 + 112289 0.7 0.999441
Target:  5'- uUGGUGGCGGuccagcugaUGGUGGUAcuGGuGGAUCu -3'
miRNA:   3'- -ACUACUGCU---------ACCACCAUu-UC-CUUAGu -5'
31688 3' -46.6 NC_006883.1 + 112233 0.71 0.998636
Target:  5'- cGGUGGCGGUGGaacuggaauauuaGGUGAAGG-AUCu -3'
miRNA:   3'- aCUACUGCUACCa------------CCAUUUCCuUAGu -5'
31688 3' -46.6 NC_006883.1 + 45791 0.71 0.998472
Target:  5'- aGA-GACuAUGGUGGUGAAG-AAUCAc -3'
miRNA:   3'- aCUaCUGcUACCACCAUUUCcUUAGU- -5'
31688 3' -46.6 NC_006883.1 + 12402 0.71 0.998163
Target:  5'- cUGGUGGCGGUGGUGGUGc-------- -3'
miRNA:   3'- -ACUACUGCUACCACCAUuuccuuagu -5'
31688 3' -46.6 NC_006883.1 + 18176 0.71 0.998163
Target:  5'- --uUGuuGAUGGUGGUGuuGGAAUUg -3'
miRNA:   3'- acuACugCUACCACCAUuuCCUUAGu -5'
31688 3' -46.6 NC_006883.1 + 88856 0.71 0.997802
Target:  5'- aUGuUGGaucUGGUGGUGGUGGAGGAAc-- -3'
miRNA:   3'- -ACuACU---GCUACCACCAUUUCCUUagu -5'
31688 3' -46.6 NC_006883.1 + 16280 0.73 0.993268
Target:  5'- aGA-GACcuGAUGGUGGUAAuGGAGUUg -3'
miRNA:   3'- aCUaCUG--CUACCACCAUUuCCUUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.