Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31688 | 3' | -46.6 | NC_006883.1 | + | 135574 | 0.66 | 0.999995 |
Target: 5'- ----uACGAUGGUGGUauuGAAGaGAUCAu -3' miRNA: 3'- acuacUGCUACCACCA---UUUCcUUAGU- -5' |
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31688 | 3' | -46.6 | NC_006883.1 | + | 40107 | 0.66 | 0.999997 |
Target: 5'- gGA-GAaGGUGGUGGUAAAGGu---- -3' miRNA: 3'- aCUaCUgCUACCACCAUUUCCuuagu -5' |
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31688 | 3' | -46.6 | NC_006883.1 | + | 112042 | 0.66 | 0.999997 |
Target: 5'- gGA-GAUGGUGGUGGUcAAGGuGGUg- -3' miRNA: 3'- aCUaCUGCUACCACCAuUUCC-UUAgu -5' |
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31688 | 3' | -46.6 | NC_006883.1 | + | 161545 | 0.66 | 0.999998 |
Target: 5'- uUGGUaaaGAaGGUGGUGGUguGAAGGAG-CAa -3' miRNA: 3'- -ACUA---CUgCUACCACCA--UUUCCUUaGU- -5' |
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31688 | 3' | -46.6 | NC_006883.1 | + | 212487 | 0.66 | 0.999998 |
Target: 5'- aGAUGAuacUGGUagaGGUGGUAAGGGuAAUa- -3' miRNA: 3'- aCUACU---GCUA---CCACCAUUUCC-UUAgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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