Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31720 | 3' | -52.2 | NC_006938.1 | + | 26924 | 0.7 | 0.716692 |
Target: 5'- aAGUGGaCCGgcG-CGGcccgUGACUGGGCCu -3' miRNA: 3'- -UCAUC-GGCuuCaGUUu---GCUGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 27023 | 0.74 | 0.487529 |
Target: 5'- ---cGCCGAcGUCucGCGAC-GGGCCa -3' miRNA: 3'- ucauCGGCUuCAGuuUGCUGaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 28657 | 0.71 | 0.661864 |
Target: 5'- cGUGGCUGGAGcUCcgucGCGGCUGGGa- -3' miRNA: 3'- uCAUCGGCUUC-AGuu--UGCUGACCCgg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 30843 | 0.69 | 0.769383 |
Target: 5'- aGGUcGCCGAGGUCucuGGgGcACUGGccGCCg -3' miRNA: 3'- -UCAuCGGCUUCAGu--UUgC-UGACC--CGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 32868 | 0.7 | 0.70585 |
Target: 5'- cGUGGCCGGuggcauGUUugacGACGugUGGGaCCc -3' miRNA: 3'- uCAUCGGCUu-----CAGu---UUGCugACCC-GG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 33076 | 0.71 | 0.628537 |
Target: 5'- gGGUGGCCG-AGUgGuAUGGCUGGcGCa -3' miRNA: 3'- -UCAUCGGCuUCAgUuUGCUGACC-CGg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 34262 | 0.69 | 0.759087 |
Target: 5'- --aGGCgGAGGUCAAcgaGCcGCaGGGCCa -3' miRNA: 3'- ucaUCGgCUUCAGUU---UGcUGaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 34726 | 0.66 | 0.898505 |
Target: 5'- aGGgAGCgGGAGUCAGGCGAggcaCUGaccgugcgcgucgcGGCCc -3' miRNA: 3'- -UCaUCGgCUUCAGUUUGCU----GAC--------------CCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 38936 | 0.68 | 0.789532 |
Target: 5'- cGUGGCCGggGUCGuAGCGcCgGaGGUa -3' miRNA: 3'- uCAUCGGCuuCAGU-UUGCuGaC-CCGg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 41832 | 0.68 | 0.827734 |
Target: 5'- --gGGCCGAcGGUCAAcacCGGCUcugucGGGCUg -3' miRNA: 3'- ucaUCGGCU-UCAGUUu--GCUGA-----CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 42227 | 0.67 | 0.845617 |
Target: 5'- cGUuGCCGGAGUCGA-UGAUgagagugGGaGCCg -3' miRNA: 3'- uCAuCGGCUUCAGUUuGCUGa------CC-CGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 43260 | 0.67 | 0.862586 |
Target: 5'- cGGUGGCCcug--CAGACGACUGG-CUu -3' miRNA: 3'- -UCAUCGGcuucaGUUUGCUGACCcGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 45661 | 0.66 | 0.900598 |
Target: 5'- --aGGCCgGGAGgccgaGAACGGCUGGaGCg -3' miRNA: 3'- ucaUCGG-CUUCag---UUUGCUGACC-CGg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 46073 | 0.74 | 0.487529 |
Target: 5'- uGGUGGCCcAGG-CAGACGGCacGGCCg -3' miRNA: 3'- -UCAUCGGcUUCaGUUUGCUGacCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 50247 | 0.66 | 0.907397 |
Target: 5'- --aGGCCGggGUC---CGGC-GGGUCc -3' miRNA: 3'- ucaUCGGCuuCAGuuuGCUGaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 50890 | 0.66 | 0.899903 |
Target: 5'- --cGGCCGAGGcgugcUCAAcgccuuccgcgagGCGGCcgaGGGCCu -3' miRNA: 3'- ucaUCGGCUUC-----AGUU-------------UGCUGa--CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 51906 | 0.72 | 0.566599 |
Target: 5'- cAGUGGCgCugcagcagacgcucuGggGUCAGGCGGCggUGGGCUc -3' miRNA: 3'- -UCAUCG-G---------------CuuCAGUUUGCUG--ACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 52376 | 0.69 | 0.760123 |
Target: 5'- gGGUcAGCCGAGGcgAGACGAUcgacgucaacccacgGGGCCa -3' miRNA: 3'- -UCA-UCGGCUUCagUUUGCUGa--------------CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 52649 | 0.66 | 0.886182 |
Target: 5'- gGGUuucgAGCgGcg--CAAcaGCGACUGGGCCc -3' miRNA: 3'- -UCA----UCGgCuucaGUU--UGCUGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 53957 | 0.66 | 0.893525 |
Target: 5'- aGGUccAGCgGGAGUCAgccccGACGACgaacacccGGCCc -3' miRNA: 3'- -UCA--UCGgCUUCAGU-----UUGCUGac------CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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