miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31721 5' -54.4 NC_006938.1 + 1440 0.66 0.760831
Target:  5'- -gGGAUGAGUGcGCUCgCGUCCAa--- -3'
miRNA:   3'- aaCUUGCUCGC-CGAGaGCAGGUacug -5'
31721 5' -54.4 NC_006938.1 + 11113 0.68 0.663803
Target:  5'- -gGAgGCGAGUGGUUCUCGcCC--GACa -3'
miRNA:   3'- aaCU-UGCUCGCCGAGAGCaGGuaCUG- -5'
31721 5' -54.4 NC_006938.1 + 14534 0.69 0.564208
Target:  5'- -gGGACGAGUgugccgccauuGGCUCggcgGUCUAUGACg -3'
miRNA:   3'- aaCUUGCUCG-----------CCGAGag--CAGGUACUG- -5'
31721 5' -54.4 NC_006938.1 + 15821 0.67 0.685868
Target:  5'- -aGcACGAGgccagaGGUcuggaUCUCGUCCGUGGCa -3'
miRNA:   3'- aaCuUGCUCg-----CCG-----AGAGCAGGUACUG- -5'
31721 5' -54.4 NC_006938.1 + 17485 0.66 0.739908
Target:  5'- -cGGACGGGCGGUcacaUCGcuggCUAUGGCu -3'
miRNA:   3'- aaCUUGCUCGCCGag--AGCa---GGUACUG- -5'
31721 5' -54.4 NC_006938.1 + 33042 0.71 0.489464
Target:  5'- -aGGugGAG-GaGCUC-CGUCCGUGGCg -3'
miRNA:   3'- aaCUugCUCgC-CGAGaGCAGGUACUG- -5'
31721 5' -54.4 NC_006938.1 + 35432 0.7 0.542463
Target:  5'- gUGAACGAggaGUGGCUCgaCG-CCAUGAUc -3'
miRNA:   3'- aACUUGCU---CGCCGAGa-GCaGGUACUG- -5'
31721 5' -54.4 NC_006938.1 + 35504 0.66 0.781217
Target:  5'- cUGGGCcAGCGGCUUgcugUCGcCCuUGGCa -3'
miRNA:   3'- aACUUGcUCGCCGAG----AGCaGGuACUG- -5'
31721 5' -54.4 NC_006938.1 + 36330 0.67 0.718542
Target:  5'- -cGcAGCGAGCGGaUCUUGccgUCGUGACa -3'
miRNA:   3'- aaC-UUGCUCGCCgAGAGCa--GGUACUG- -5'
31721 5' -54.4 NC_006938.1 + 37174 0.69 0.597222
Target:  5'- aUGAucuCGGGCGGcCUCUCGcCCuggaGACu -3'
miRNA:   3'- aACUu--GCUCGCC-GAGAGCaGGua--CUG- -5'
31721 5' -54.4 NC_006938.1 + 39297 0.67 0.707722
Target:  5'- aUGAGC-AGCGGgUCgaaGUCCAugUGGCg -3'
miRNA:   3'- aACUUGcUCGCCgAGag-CAGGU--ACUG- -5'
31721 5' -54.4 NC_006938.1 + 53023 0.66 0.750431
Target:  5'- --cAGC-AGCGGCauguaCUCGUCCGUGAg -3'
miRNA:   3'- aacUUGcUCGCCGa----GAGCAGGUACUg -5'
31721 5' -54.4 NC_006938.1 + 54994 1.06 0.001974
Target:  5'- cUUGAACGAGCGGCUCUCGUCCAUGACc -3'
miRNA:   3'- -AACUUGCUCGCCGAGAGCAGGUACUG- -5'
31721 5' -54.4 NC_006938.1 + 55886 0.67 0.685868
Target:  5'- -cGAGCGAGCgagGGCUC-CGgccaggugCCcgGACa -3'
miRNA:   3'- aaCUUGCUCG---CCGAGaGCa-------GGuaCUG- -5'
31721 5' -54.4 NC_006938.1 + 56156 0.67 0.718542
Target:  5'- aUGAACGAGauccgucagucUGGCUCUCuGUCUGacgGACu -3'
miRNA:   3'- aACUUGCUC-----------GCCGAGAG-CAGGUa--CUG- -5'
31721 5' -54.4 NC_006938.1 + 56219 0.68 0.652721
Target:  5'- cUGAGCcaGGaCGGuCUCUCGUCCggGAUg -3'
miRNA:   3'- aACUUGc-UC-GCC-GAGAGCAGGuaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.