Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31723 | 5' | -56.2 | NC_006938.1 | + | 19322 | 0.66 | 0.658924 |
Target: 5'- aGAGGGCCuGGCUCacacUGCCAGugaaGGCa -3' miRNA: 3'- aCUUCUGG-CCGAGcu--ACGGUCuc--CUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 26366 | 0.66 | 0.669787 |
Target: 5'- cUGggGACCGGUcCGuggagcauAUGCCcaugGGAGcGGCg -3' miRNA: 3'- -ACuuCUGGCCGaGC--------UACGG----UCUC-CUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 22028 | 0.66 | 0.680615 |
Target: 5'- aGAAG-UUGGC-CGGggcuCCAGAGGACg -3' miRNA: 3'- aCUUCuGGCCGaGCUac--GGUCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 11872 | 0.66 | 0.691398 |
Target: 5'- gUGggGAgCCGGUugacucgCGGaGCCcagAGAGGGCg -3' miRNA: 3'- -ACuuCU-GGCCGa------GCUaCGG---UCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 52432 | 0.66 | 0.712784 |
Target: 5'- gGggGACgGGCgggUCGGUGUCGGGcGAg -3' miRNA: 3'- aCuuCUGgCCG---AGCUACGGUCUcCUg -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 49306 | 0.66 | 0.712784 |
Target: 5'- ---uGACCGGCUCGuu-CgAGcAGGACg -3' miRNA: 3'- acuuCUGGCCGAGCuacGgUC-UCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 18130 | 0.66 | 0.702124 |
Target: 5'- ---uGACCGGUguggCGGUGggaCCcGAGGACg -3' miRNA: 3'- acuuCUGGCCGa---GCUAC---GGuCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 29659 | 0.66 | 0.688168 |
Target: 5'- gGAGGAuCUGGCUCGAcgagccgccccUGCCGccguacaaccagcuGAuGGACa -3' miRNA: 3'- aCUUCU-GGCCGAGCU-----------ACGGU--------------CU-CCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 36572 | 0.66 | 0.680615 |
Target: 5'- ---cGGCaGGcCUCGAU-CCGGAGGACu -3' miRNA: 3'- acuuCUGgCC-GAGCUAcGGUCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 8151 | 0.66 | 0.669787 |
Target: 5'- aUGGAGACuCGGCcgugcaccgauUUGGgacGCCaauGGAGGACa -3' miRNA: 3'- -ACUUCUG-GCCG-----------AGCUa--CGG---UCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 14687 | 0.67 | 0.62623 |
Target: 5'- aUGGAGACauguauGGCUaUGGUGaCgAGAGGACc -3' miRNA: 3'- -ACUUCUGg-----CCGA-GCUAC-GgUCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 206 | 0.67 | 0.648037 |
Target: 5'- gGgcGACCGGCUCGccGCCGcccuucGGAa -3' miRNA: 3'- aCuuCUGGCCGAGCuaCGGUcu----CCUg -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 16442 | 0.67 | 0.646947 |
Target: 5'- cUGGAGuuCGcGCUCuGGUGCCAGGaagaguggcuccuGGGCa -3' miRNA: 3'- -ACUUCugGC-CGAG-CUACGGUCU-------------CCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 22039 | 0.67 | 0.615329 |
Target: 5'- -cAAGGUCGGCUaCGAgGCC-GAGGACg -3' miRNA: 3'- acUUCUGGCCGA-GCUaCGGuCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 18056 | 0.67 | 0.615329 |
Target: 5'- cGAGGACCGGCUCaugGAgGUCGagauccGAGcGACg -3' miRNA: 3'- aCUUCUGGCCGAG---CUaCGGU------CUC-CUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 60931 | 0.67 | 0.59358 |
Target: 5'- gUGGAGGCCGcaCUCGAU-CCcGAGGAUc -3' miRNA: 3'- -ACUUCUGGCc-GAGCUAcGGuCUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 9122 | 0.67 | 0.59358 |
Target: 5'- uUGAAGuCCgGGgUCGucaggGCCGcGAGGACa -3' miRNA: 3'- -ACUUCuGG-CCgAGCua---CGGU-CUCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 27482 | 0.68 | 0.561215 |
Target: 5'- aUGGAGAgcggauacCCGGUcuccgucaccguUCGAUGCCAGgacugcGGGGCc -3' miRNA: 3'- -ACUUCU--------GGCCG------------AGCUACGGUC------UCCUG- -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 31817 | 0.68 | 0.539906 |
Target: 5'- ---cGACUGGCUCGAgcUGCUGGAGcGGg -3' miRNA: 3'- acuuCUGGCCGAGCU--ACGGUCUC-CUg -5' |
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31723 | 5' | -56.2 | NC_006938.1 | + | 14176 | 0.68 | 0.582748 |
Target: 5'- uUGAAugccACCGGCUCGccGUcaucgucgauCAGAGGGCg -3' miRNA: 3'- -ACUUc---UGGCCGAGCuaCG----------GUCUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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