miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31723 5' -56.2 NC_006938.1 + 28036 0.76 0.200287
Target:  5'- aUGGAGcuCUGGUUCGAUGCCA-AGGGCg -3'
miRNA:   3'- -ACUUCu-GGCCGAGCUACGGUcUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 22039 0.67 0.615329
Target:  5'- -cAAGGUCGGCUaCGAgGCC-GAGGACg -3'
miRNA:   3'- acUUCUGGCCGA-GCUaCGGuCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 14687 0.67 0.62623
Target:  5'- aUGGAGACauguauGGCUaUGGUGaCgAGAGGACc -3'
miRNA:   3'- -ACUUCUGg-----CCGA-GCUAC-GgUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 16442 0.67 0.646947
Target:  5'- cUGGAGuuCGcGCUCuGGUGCCAGGaagaguggcuccuGGGCa -3'
miRNA:   3'- -ACUUCugGC-CGAG-CUACGGUCU-------------CCUG- -5'
31723 5' -56.2 NC_006938.1 + 8151 0.66 0.669787
Target:  5'- aUGGAGACuCGGCcgugcaccgauUUGGgacGCCaauGGAGGACa -3'
miRNA:   3'- -ACUUCUG-GCCG-----------AGCUa--CGG---UCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 36572 0.66 0.680615
Target:  5'- ---cGGCaGGcCUCGAU-CCGGAGGACu -3'
miRNA:   3'- acuuCUGgCC-GAGCUAcGGUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 29659 0.66 0.688168
Target:  5'- gGAGGAuCUGGCUCGAcgagccgccccUGCCGccguacaaccagcuGAuGGACa -3'
miRNA:   3'- aCUUCU-GGCCGAGCU-----------ACGGU--------------CU-CCUG- -5'
31723 5' -56.2 NC_006938.1 + 18130 0.66 0.702124
Target:  5'- ---uGACCGGUguggCGGUGggaCCcGAGGACg -3'
miRNA:   3'- acuuCUGGCCGa---GCUAC---GGuCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 49306 0.66 0.712784
Target:  5'- ---uGACCGGCUCGuu-CgAGcAGGACg -3'
miRNA:   3'- acuuCUGGCCGAGCuacGgUC-UCCUG- -5'
31723 5' -56.2 NC_006938.1 + 18056 0.67 0.615329
Target:  5'- cGAGGACCGGCUCaugGAgGUCGagauccGAGcGACg -3'
miRNA:   3'- aCUUCUGGCCGAG---CUaCGGU------CUC-CUG- -5'
31723 5' -56.2 NC_006938.1 + 27482 0.68 0.561215
Target:  5'- aUGGAGAgcggauacCCGGUcuccgucaccguUCGAUGCCAGgacugcGGGGCc -3'
miRNA:   3'- -ACUUCU--------GGCCG------------AGCUACGGUC------UCCUG- -5'
31723 5' -56.2 NC_006938.1 + 34580 0.71 0.383133
Target:  5'- cGAAuGcCCGGCUCGAccUGCCGacGGACg -3'
miRNA:   3'- aCUU-CuGGCCGAGCU--ACGGUcuCCUG- -5'
31723 5' -56.2 NC_006938.1 + 8302 0.71 0.404723
Target:  5'- cGgcGACCGGCUCGucUGCCuguccaaugaccacGAGGAg -3'
miRNA:   3'- aCuuCUGGCCGAGCu-ACGGu-------------CUCCUg -5'
31723 5' -56.2 NC_006938.1 + 45586 0.7 0.438505
Target:  5'- -uGAGACCGGCuUUGGUGUCc-AGGACg -3'
miRNA:   3'- acUUCUGGCCG-AGCUACGGucUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 48970 0.69 0.477859
Target:  5'- gUGAAGACCcGCUgGAUGUCucuGGACc -3'
miRNA:   3'- -ACUUCUGGcCGAgCUACGGucuCCUG- -5'
31723 5' -56.2 NC_006938.1 + 51733 0.69 0.487969
Target:  5'- cGAGGGCU---UCGAUGCCcagAGGGGACa -3'
miRNA:   3'- aCUUCUGGccgAGCUACGG---UCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 35437 0.69 0.51575
Target:  5'- cGAGGAgUGGCUCGAcGCCAuGAuccgccaccagaucGGGCu -3'
miRNA:   3'- aCUUCUgGCCGAGCUaCGGU-CU--------------CCUG- -5'
31723 5' -56.2 NC_006938.1 + 4335 0.69 0.529353
Target:  5'- cUGGAGACCGcGCUCGccgagcUGCgaaggCAGAcGGACa -3'
miRNA:   3'- -ACUUCUGGC-CGAGCu-----ACG-----GUCU-CCUG- -5'
31723 5' -56.2 NC_006938.1 + 31817 0.68 0.539906
Target:  5'- ---cGACUGGCUCGAgcUGCUGGAGcGGg -3'
miRNA:   3'- acuuCUGGCCGAGCU--ACGGUCUC-CUg -5'
31723 5' -56.2 NC_006938.1 + 53501 1.1 0.000753
Target:  5'- cUGAAGACCGGCUCGAUGCCAGAGGACa -3'
miRNA:   3'- -ACUUCUGGCCGAGCUACGGUCUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.