miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31723 5' -56.2 NC_006938.1 + 14176 0.68 0.582748
Target:  5'- uUGAAugccACCGGCUCGccGUcaucgucgauCAGAGGGCg -3'
miRNA:   3'- -ACUUc---UGGCCGAGCuaCG----------GUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 9122 0.67 0.59358
Target:  5'- uUGAAGuCCgGGgUCGucaggGCCGcGAGGACa -3'
miRNA:   3'- -ACUUCuGG-CCgAGCua---CGGU-CUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 60931 0.67 0.59358
Target:  5'- gUGGAGGCCGcaCUCGAU-CCcGAGGAUc -3'
miRNA:   3'- -ACUUCUGGCc-GAGCUAcGGuCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 22039 0.67 0.615329
Target:  5'- -cAAGGUCGGCUaCGAgGCC-GAGGACg -3'
miRNA:   3'- acUUCUGGCCGA-GCUaCGGuCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 18056 0.67 0.615329
Target:  5'- cGAGGACCGGCUCaugGAgGUCGagauccGAGcGACg -3'
miRNA:   3'- aCUUCUGGCCGAG---CUaCGGU------CUC-CUG- -5'
31723 5' -56.2 NC_006938.1 + 14687 0.67 0.62623
Target:  5'- aUGGAGACauguauGGCUaUGGUGaCgAGAGGACc -3'
miRNA:   3'- -ACUUCUGg-----CCGA-GCUAC-GgUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 16442 0.67 0.646947
Target:  5'- cUGGAGuuCGcGCUCuGGUGCCAGGaagaguggcuccuGGGCa -3'
miRNA:   3'- -ACUUCugGC-CGAG-CUACGGUCU-------------CCUG- -5'
31723 5' -56.2 NC_006938.1 + 206 0.67 0.648037
Target:  5'- gGgcGACCGGCUCGccGCCGcccuucGGAa -3'
miRNA:   3'- aCuuCUGGCCGAGCuaCGGUcu----CCUg -5'
31723 5' -56.2 NC_006938.1 + 19322 0.66 0.658924
Target:  5'- aGAGGGCCuGGCUCacacUGCCAGugaaGGCa -3'
miRNA:   3'- aCUUCUGG-CCGAGcu--ACGGUCuc--CUG- -5'
31723 5' -56.2 NC_006938.1 + 8151 0.66 0.669787
Target:  5'- aUGGAGACuCGGCcgugcaccgauUUGGgacGCCaauGGAGGACa -3'
miRNA:   3'- -ACUUCUG-GCCG-----------AGCUa--CGG---UCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 26366 0.66 0.669787
Target:  5'- cUGggGACCGGUcCGuggagcauAUGCCcaugGGAGcGGCg -3'
miRNA:   3'- -ACuuCUGGCCGaGC--------UACGG----UCUC-CUG- -5'
31723 5' -56.2 NC_006938.1 + 36572 0.66 0.680615
Target:  5'- ---cGGCaGGcCUCGAU-CCGGAGGACu -3'
miRNA:   3'- acuuCUGgCC-GAGCUAcGGUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 22028 0.66 0.680615
Target:  5'- aGAAG-UUGGC-CGGggcuCCAGAGGACg -3'
miRNA:   3'- aCUUCuGGCCGaGCUac--GGUCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 29659 0.66 0.688168
Target:  5'- gGAGGAuCUGGCUCGAcgagccgccccUGCCGccguacaaccagcuGAuGGACa -3'
miRNA:   3'- aCUUCU-GGCCGAGCU-----------ACGGU--------------CU-CCUG- -5'
31723 5' -56.2 NC_006938.1 + 11872 0.66 0.691398
Target:  5'- gUGggGAgCCGGUugacucgCGGaGCCcagAGAGGGCg -3'
miRNA:   3'- -ACuuCU-GGCCGa------GCUaCGG---UCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 18130 0.66 0.702124
Target:  5'- ---uGACCGGUguggCGGUGggaCCcGAGGACg -3'
miRNA:   3'- acuuCUGGCCGa---GCUAC---GGuCUCCUG- -5'
31723 5' -56.2 NC_006938.1 + 49306 0.66 0.712784
Target:  5'- ---uGACCGGCUCGuu-CgAGcAGGACg -3'
miRNA:   3'- acuuCUGGCCGAGCuacGgUC-UCCUG- -5'
31723 5' -56.2 NC_006938.1 + 52432 0.66 0.712784
Target:  5'- gGggGACgGGCgggUCGGUGUCGGGcGAg -3'
miRNA:   3'- aCuuCUGgCCG---AGCUACGGUCUcCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.