miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31729 3' -59.6 NC_006938.1 + 1419 0.7 0.303527
Target:  5'- gACaCGCCGGucGCCAcgGGCcgGGUGCACUa -3'
miRNA:   3'- -UG-GCGGCU--CGGUuaCCG--CCGUGUGAg -5'
31729 3' -59.6 NC_006938.1 + 4142 0.72 0.213891
Target:  5'- uCgGCCGGGUCc--GGCGGCGcCACUCg -3'
miRNA:   3'- uGgCGGCUCGGuuaCCGCCGU-GUGAG- -5'
31729 3' -59.6 NC_006938.1 + 5183 0.67 0.447503
Target:  5'- uCCGCUGGGCCAGcGGCaGCaggaACGCg- -3'
miRNA:   3'- uGGCGGCUCGGUUaCCGcCG----UGUGag -5'
31729 3' -59.6 NC_006938.1 + 7487 0.66 0.466807
Target:  5'- gGCCcugaGCCGGGUCGacgaGUGGCuGGCAuccggcCACUCc -3'
miRNA:   3'- -UGG----CGGCUCGGU----UACCG-CCGU------GUGAG- -5'
31729 3' -59.6 NC_006938.1 + 12706 0.69 0.318466
Target:  5'- uCCGUCGGuGCCGAgcUGGCGGa--GCUCg -3'
miRNA:   3'- uGGCGGCU-CGGUU--ACCGCCgugUGAG- -5'
31729 3' -59.6 NC_006938.1 + 15228 0.68 0.38365
Target:  5'- cGCCGcCCGAGCCGGgguucaGGCcGuCACGCUg -3'
miRNA:   3'- -UGGC-GGCUCGGUUa-----CCGcC-GUGUGAg -5'
31729 3' -59.6 NC_006938.1 + 20030 0.71 0.261963
Target:  5'- gACUGCa-GGCgAagGGUGGCACGCUCu -3'
miRNA:   3'- -UGGCGgcUCGgUuaCCGCCGUGUGAG- -5'
31729 3' -59.6 NC_006938.1 + 21125 0.67 0.410275
Target:  5'- uCCgGCCGAGggAGUGGCaGGCGuCGCUCc -3'
miRNA:   3'- uGG-CGGCUCggUUACCG-CCGU-GUGAG- -5'
31729 3' -59.6 NC_006938.1 + 23649 0.66 0.510709
Target:  5'- cCCGCCccacGAGCCGaacgcgagcgucuccGUGGUGGCgauggaguugGCACUg -3'
miRNA:   3'- uGGCGG----CUCGGU---------------UACCGCCG----------UGUGAg -5'
31729 3' -59.6 NC_006938.1 + 23688 0.68 0.366549
Target:  5'- -aCGUCG-GCCAG-GGCGGCAUggccgagauGCUCg -3'
miRNA:   3'- ugGCGGCuCGGUUaCCGCCGUG---------UGAG- -5'
31729 3' -59.6 NC_006938.1 + 23960 0.66 0.506644
Target:  5'- gGCUGUgauggucagCGuGCCAGUGGCGGCgACG-UCg -3'
miRNA:   3'- -UGGCG---------GCuCGGUUACCGCCG-UGUgAG- -5'
31729 3' -59.6 NC_006938.1 + 24555 0.75 0.14403
Target:  5'- cGCCGCCGcgcgcuGCCAGaGGCcauGCGCGCUCg -3'
miRNA:   3'- -UGGCGGCu-----CGGUUaCCGc--CGUGUGAG- -5'
31729 3' -59.6 NC_006938.1 + 28959 0.67 0.447503
Target:  5'- gGCCGCUG-GCCug-GGCGGgACAg-- -3'
miRNA:   3'- -UGGCGGCuCGGuuaCCGCCgUGUgag -5'
31729 3' -59.6 NC_006938.1 + 29979 0.81 0.053078
Target:  5'- uGuuGuuGAGCCGGUGGCGGCACGgUUg -3'
miRNA:   3'- -UggCggCUCGGUUACCGCCGUGUgAG- -5'
31729 3' -59.6 NC_006938.1 + 32013 0.77 0.098296
Target:  5'- uGCCaCgGAGCCAGUGGUGGCugGCa- -3'
miRNA:   3'- -UGGcGgCUCGGUUACCGCCGugUGag -5'
31729 3' -59.6 NC_006938.1 + 34354 0.66 0.496542
Target:  5'- -aCGCCGAGCCAccgaGGCacCACGCUg -3'
miRNA:   3'- ugGCGGCUCGGUua--CCGccGUGUGAg -5'
31729 3' -59.6 NC_006938.1 + 38039 0.73 0.173592
Target:  5'- aGCaCGCCGAGCgGAUGGCcaaGGC-CGCUg -3'
miRNA:   3'- -UG-GCGGCUCGgUUACCG---CCGuGUGAg -5'
31729 3' -59.6 NC_006938.1 + 40829 0.66 0.475633
Target:  5'- aGCaCGcCCGAGCCAA-GGCguuccuggagucaGGCACGacCUCg -3'
miRNA:   3'- -UG-GC-GGCUCGGUUaCCG-------------CCGUGU--GAG- -5'
31729 3' -59.6 NC_006938.1 + 41289 0.73 0.187845
Target:  5'- aACUuCCGGGCCGGUGGCGcCACGgUCa -3'
miRNA:   3'- -UGGcGGCUCGGUUACCGCcGUGUgAG- -5'
31729 3' -59.6 NC_006938.1 + 41598 0.71 0.255504
Target:  5'- -gCGCCGGGUUGAUGGCGcacucgugaGCGCGCUg -3'
miRNA:   3'- ugGCGGCUCGGUUACCGC---------CGUGUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.