Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31730 | 3' | -55.9 | NC_006938.1 | + | 44509 | 0.67 | 0.705053 |
Target: 5'- gCCCGcCUCGUCCGccGcGAcCAUGGCCGc -3' miRNA: 3'- -GGGCcGAGCAGGU--C-CUuGUACUGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 31164 | 0.69 | 0.555449 |
Target: 5'- uCCUcGC-CGUCCGGGAACAcccacuuguUGGCCGa -3' miRNA: 3'- -GGGcCGaGCAGGUCCUUGU---------ACUGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 42505 | 0.7 | 0.493482 |
Target: 5'- aUCCGGC-CGUUCGGGAcgauugACAUGAgCAc -3' miRNA: 3'- -GGGCCGaGCAGGUCCU------UGUACUgGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 47714 | 1.12 | 0.000768 |
Target: 5'- aCCCGGCUCGUCCAGGAACAUGACCAGg -3' miRNA: 3'- -GGGCCGAGCAGGUCCUUGUACUGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 57210 | 0.68 | 0.640998 |
Target: 5'- gUCCGGCUCGUggaCAGcGACGaGACCGc -3' miRNA: 3'- -GGGCCGAGCAg--GUCcUUGUaCUGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 31876 | 0.66 | 0.756648 |
Target: 5'- gCCGGUcugcgCGUaguacgCCAGGAACuUGGCCGc -3' miRNA: 3'- gGGCCGa----GCA------GGUCCUUGuACUGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 7660 | 0.66 | 0.746529 |
Target: 5'- gCCaCGGU--GUCCGGGcACcUGGCCGGa -3' miRNA: 3'- -GG-GCCGagCAGGUCCuUGuACUGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 41797 | 0.66 | 0.7363 |
Target: 5'- gUCCGGgUUGUCCGGGucCA-GGCCc- -3' miRNA: 3'- -GGGCCgAGCAGGUCCuuGUaCUGGuc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 53 | 0.66 | 0.7363 |
Target: 5'- -gCGGUcCGUCCuuGAACGUGcGCCAGu -3' miRNA: 3'- ggGCCGaGCAGGucCUUGUAC-UGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 59858 | 0.69 | 0.566018 |
Target: 5'- --aGGcCUCGUCCAGGAugaACGcGACCGu -3' miRNA: 3'- gggCC-GAGCAGGUCCU---UGUaCUGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 41856 | 0.68 | 0.61303 |
Target: 5'- cCCCGuGCUgGUCCAGGucgucuaucucagagAGCcgGGgCAGg -3' miRNA: 3'- -GGGC-CGAgCAGGUCC---------------UUGuaCUgGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 50411 | 0.68 | 0.630238 |
Target: 5'- aCCGGCcugccaUCGuUCCAGuuGCAcggGACCAGg -3' miRNA: 3'- gGGCCG------AGC-AGGUCcuUGUa--CUGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 26350 | 0.67 | 0.705053 |
Target: 5'- uUCCGGC-CGUCCaccacuGGGGACcgGuCCGu -3' miRNA: 3'- -GGGCCGaGCAGG------UCCUUGuaCuGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 43391 | 0.68 | 0.608732 |
Target: 5'- aCCGGcCUCGUC---GAACAUGAuCCGGg -3' miRNA: 3'- gGGCC-GAGCAGgucCUUGUACU-GGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 55975 | 0.67 | 0.683864 |
Target: 5'- aCUCGGCccgagacgcccUCGgCCAGGuGCuUGGCCAGc -3' miRNA: 3'- -GGGCCG-----------AGCaGGUCCuUGuACUGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 56229 | 0.68 | 0.630238 |
Target: 5'- -aCGGUcucUCGUCCGGGAugAa-GCCAGa -3' miRNA: 3'- ggGCCG---AGCAGGUCCUugUacUGGUC- -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 53507 | 0.68 | 0.598004 |
Target: 5'- aCCGGCUCGaugCCAGaGGACAcguUGuCCGc -3' miRNA: 3'- gGGCCGAGCa--GGUC-CUUGU---ACuGGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 31942 | 0.69 | 0.544937 |
Target: 5'- aCCGGCUUGUCCAuGAACuucuUGGuCCGc -3' miRNA: 3'- gGGCCGAGCAGGUcCUUGu---ACU-GGUc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 39585 | 0.67 | 0.662485 |
Target: 5'- aCCaGGCacCGUCCGGGAugGUGcCCu- -3' miRNA: 3'- gGG-CCGa-GCAGGUCCUugUACuGGuc -5' |
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31730 | 3' | -55.9 | NC_006938.1 | + | 50689 | 0.68 | 0.639922 |
Target: 5'- cCCCGGCgagcgccUgGUCCAGGAu--UGGCCc- -3' miRNA: 3'- -GGGCCG-------AgCAGGUCCUuguACUGGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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