miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31734 5' -59.9 NC_006938.1 + 15123 0.66 0.558758
Target:  5'- cCUCCGCCAUCUUgaugcgggugaaGUCCGagGAGGUg -3'
miRNA:   3'- -GAGGUGGUAGAGggg---------CAGGCg-CUCCG- -5'
31734 5' -59.9 NC_006938.1 + 58116 0.66 0.554648
Target:  5'- -gUCACagcuUCUCUCCuuuucuauGUCCGCGuGGCa -3'
miRNA:   3'- gaGGUGgu--AGAGGGG--------CAGGCGCuCCG- -5'
31734 5' -59.9 NC_006938.1 + 41278 0.66 0.544414
Target:  5'- aCUCCGCCAUCaacUUCCGggCCG-GuGGCg -3'
miRNA:   3'- -GAGGUGGUAGa--GGGGCa-GGCgCuCCG- -5'
31734 5' -59.9 NC_006938.1 + 11478 0.66 0.534242
Target:  5'- aUCCcaAUCAaaagggugacuUCUUUCCGaUUCGCGAGGCg -3'
miRNA:   3'- gAGG--UGGU-----------AGAGGGGC-AGGCGCUCCG- -5'
31734 5' -59.9 NC_006938.1 + 53900 0.66 0.534242
Target:  5'- -gCCACCGUCgaCCCC-UCC--GAGGCg -3'
miRNA:   3'- gaGGUGGUAGa-GGGGcAGGcgCUCCG- -5'
31734 5' -59.9 NC_006938.1 + 17634 0.66 0.514108
Target:  5'- uUCUggGCCGUCUCCg---CCGCcGAGGCu -3'
miRNA:   3'- gAGG--UGGUAGAGGggcaGGCG-CUCCG- -5'
31734 5' -59.9 NC_006938.1 + 20160 0.67 0.484513
Target:  5'- --gCACCAggUCUCCCggaucaUGUUCGaCGAGGCc -3'
miRNA:   3'- gagGUGGU--AGAGGG------GCAGGC-GCUCCG- -5'
31734 5' -59.9 NC_006938.1 + 59282 0.67 0.482568
Target:  5'- gCUCCACCggCUCUCCGUUCaCGuccuccuggaacGGCa -3'
miRNA:   3'- -GAGGUGGuaGAGGGGCAGGcGCu-----------CCG- -5'
31734 5' -59.9 NC_006938.1 + 52166 0.67 0.455757
Target:  5'- -gCCGCCGUCaaCCCCGUUagCGCuGAGaGCu -3'
miRNA:   3'- gaGGUGGUAGa-GGGGCAG--GCG-CUC-CG- -5'
31734 5' -59.9 NC_006938.1 + 5807 0.67 0.446377
Target:  5'- cCUCCACCuccagggucagGUCcgCCCCGaCCGUGAuGGa -3'
miRNA:   3'- -GAGGUGG-----------UAGa-GGGGCaGGCGCU-CCg -5'
31734 5' -59.9 NC_006938.1 + 22999 0.67 0.446377
Target:  5'- cCUCCAggAUCUCCUCGUCCGUcAGa- -3'
miRNA:   3'- -GAGGUggUAGAGGGGCAGGCGcUCcg -5'
31734 5' -59.9 NC_006938.1 + 20321 0.67 0.446377
Target:  5'- -gCCACCGUgCUgUUCG-CCGCGaAGGCa -3'
miRNA:   3'- gaGGUGGUA-GAgGGGCaGGCGC-UCCG- -5'
31734 5' -59.9 NC_006938.1 + 53533 0.68 0.435266
Target:  5'- gUCCGCCGUCagcgagaucgUCCCUGUgggagcgauggaCGUGAGGUg -3'
miRNA:   3'- gAGGUGGUAG----------AGGGGCAg-----------GCGCUCCG- -5'
31734 5' -59.9 NC_006938.1 + 41405 0.68 0.427947
Target:  5'- aUCCACCA-CUUCCCGagcuUCUGUGugaucGGCa -3'
miRNA:   3'- gAGGUGGUaGAGGGGC----AGGCGCu----CCG- -5'
31734 5' -59.9 NC_006938.1 + 12690 0.68 0.401166
Target:  5'- cCUCgGCCGugaUCUCUCCGUCgGUGccgagcuGGCg -3'
miRNA:   3'- -GAGgUGGU---AGAGGGGCAGgCGCu------CCG- -5'
31734 5' -59.9 NC_006938.1 + 51293 0.69 0.375476
Target:  5'- uUCCGCCAgCUCgCCaCGaCCGUGcAGGCc -3'
miRNA:   3'- gAGGUGGUaGAG-GG-GCaGGCGC-UCCG- -5'
31734 5' -59.9 NC_006938.1 + 11179 0.69 0.358978
Target:  5'- -gCCGCCAUcCUCCUCGa-CGCcGAGGCc -3'
miRNA:   3'- gaGGUGGUA-GAGGGGCagGCG-CUCCG- -5'
31734 5' -59.9 NC_006938.1 + 24983 0.69 0.350921
Target:  5'- -aCUGCgAUCUCCUgGUCCGagGAGGUg -3'
miRNA:   3'- gaGGUGgUAGAGGGgCAGGCg-CUCCG- -5'
31734 5' -59.9 NC_006938.1 + 33902 0.7 0.335196
Target:  5'- -gCCACCAUggagCCCC-UCCGCGAgaaGGCc -3'
miRNA:   3'- gaGGUGGUAga--GGGGcAGGCGCU---CCG- -5'
31734 5' -59.9 NC_006938.1 + 17875 0.7 0.305311
Target:  5'- aUCCACCucCUUCCCGcCCGCuauguGGGCg -3'
miRNA:   3'- gAGGUGGuaGAGGGGCaGGCGc----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.