Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31737 | 3' | -60.4 | NC_006938.1 | + | 17377 | 0.67 | 0.460166 |
Target: 5'- uGGUCAggcCCGCgCGcggaaacUCCAGgGGCuGcGAGCCg -3' miRNA: 3'- -CCAGU---GGCG-GC-------AGGUCgUCG-C-CUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 39243 | 0.67 | 0.451693 |
Target: 5'- cGUCGCCGCCucgCCGGCaaacGGUGGuccguccaacGCCg -3' miRNA: 3'- cCAGUGGCGGca-GGUCG----UCGCCu---------CGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 35920 | 0.67 | 0.451693 |
Target: 5'- cGUCAUCGgaCCGUUCGcCAGCGcGGCCg -3' miRNA: 3'- cCAGUGGC--GGCAGGUcGUCGCcUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 33634 | 0.67 | 0.448887 |
Target: 5'- cGGUCgucccuccggcgauACCGCUGUCUGuCAGCGGgaGGCg -3' miRNA: 3'- -CCAG--------------UGGCGGCAGGUcGUCGCC--UCGg -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 23050 | 0.67 | 0.442379 |
Target: 5'- cGUCcUCGUCGUCCGGaucggaggaAGCGGGGUUc -3' miRNA: 3'- cCAGuGGCGGCAGGUCg--------UCGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 15440 | 0.67 | 0.442379 |
Target: 5'- cGUCG-CGUCGUCguGCAGaUGuGGGCCg -3' miRNA: 3'- cCAGUgGCGGCAGguCGUC-GC-CUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 43330 | 0.67 | 0.442379 |
Target: 5'- -uUCACaGCCGUucuccauacUCGGCAGCGcGGCCu -3' miRNA: 3'- ccAGUGgCGGCA---------GGUCGUCGCcUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 40785 | 0.67 | 0.442379 |
Target: 5'- uGUCAagGCCGUCCucCAGCGGuccaaggaGGCCc -3' miRNA: 3'- cCAGUggCGGCAGGucGUCGCC--------UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 37115 | 0.67 | 0.433174 |
Target: 5'- aGGUgCACCGCUGgcaacUCGGuCGGCGaGuGCCa -3' miRNA: 3'- -CCA-GUGGCGGCa----GGUC-GUCGC-CuCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 45362 | 0.67 | 0.433174 |
Target: 5'- cGUCAUCGgCGUUCAGCuGGUGuccGGCCg -3' miRNA: 3'- cCAGUGGCgGCAGGUCG-UCGCc--UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 4551 | 0.67 | 0.424986 |
Target: 5'- aGG-CACCGUCGUCggccacgaggauugaGGCAGCgcgcuGGAGCUc -3' miRNA: 3'- -CCaGUGGCGGCAGg--------------UCGUCG-----CCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 53555 | 0.67 | 0.424082 |
Target: 5'- uGUCACUgGCaCGUUCA-UGGCGGAGCUg -3' miRNA: 3'- cCAGUGG-CG-GCAGGUcGUCGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 61552 | 0.67 | 0.424082 |
Target: 5'- --aCACCGCCGaccacucuguaUCCucgcgcucaGGCGGCGGAuCCa -3' miRNA: 3'- ccaGUGGCGGC-----------AGG---------UCGUCGCCUcGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 36654 | 0.67 | 0.424082 |
Target: 5'- aGUUGCCGCCcuGUgaUgAGCGGCuucGGAGCCu -3' miRNA: 3'- cCAGUGGCGG--CA--GgUCGUCG---CCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 77 | 0.68 | 0.418682 |
Target: 5'- aGUCACCGCCccacucgauggggacGUUCAGCucGCGaGcGGCCu -3' miRNA: 3'- cCAGUGGCGG---------------CAGGUCGu-CGC-C-UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 10737 | 0.68 | 0.406245 |
Target: 5'- cGUUGCUGCCGUCCGuGguGCcaauGGCCu -3' miRNA: 3'- cCAGUGGCGGCAGGU-CguCGcc--UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 28397 | 0.68 | 0.397506 |
Target: 5'- cGGUCAaC-CCGgcaCCGGaguGGCGGGGCCa -3' miRNA: 3'- -CCAGUgGcGGCa--GGUCg--UCGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 42868 | 0.68 | 0.386326 |
Target: 5'- uGUCGCgCgGCCuGUCCcugguucucaccacGGCGGCGGcGCCa -3' miRNA: 3'- cCAGUG-G-CGG-CAGG--------------UCGUCGCCuCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 17199 | 0.69 | 0.36378 |
Target: 5'- --gCACCGCCGUCCGcGUAGUccgucuGGAucgGCCc -3' miRNA: 3'- ccaGUGGCGGCAGGU-CGUCG------CCU---CGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 29867 | 0.69 | 0.355664 |
Target: 5'- uGGaCGCgGCUGUgaUGGCcgAGCGGAGCCa -3' miRNA: 3'- -CCaGUGgCGGCAg-GUCG--UCGCCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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