miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31737 3' -60.4 NC_006938.1 + 37059 0.69 0.324489
Target:  5'- uGUCACCGUgGgaccagaggccCCGGCAGCGuGAGaCCc -3'
miRNA:   3'- cCAGUGGCGgCa----------GGUCGUCGC-CUC-GG- -5'
31737 3' -60.4 NC_006938.1 + 29867 0.69 0.355664
Target:  5'- uGGaCGCgGCUGUgaUGGCcgAGCGGAGCCa -3'
miRNA:   3'- -CCaGUGgCGGCAg-GUCG--UCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 28397 0.68 0.397506
Target:  5'- cGGUCAaC-CCGgcaCCGGaguGGCGGGGCCa -3'
miRNA:   3'- -CCAGUgGcGGCa--GGUCg--UCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 61552 0.67 0.424082
Target:  5'- --aCACCGCCGaccacucuguaUCCucgcgcucaGGCGGCGGAuCCa -3'
miRNA:   3'- ccaGUGGCGGC-----------AGG---------UCGUCGCCUcGG- -5'
31737 3' -60.4 NC_006938.1 + 36654 0.67 0.424082
Target:  5'- aGUUGCCGCCcuGUgaUgAGCGGCuucGGAGCCu -3'
miRNA:   3'- cCAGUGGCGG--CA--GgUCGUCG---CCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 53555 0.67 0.424082
Target:  5'- uGUCACUgGCaCGUUCA-UGGCGGAGCUg -3'
miRNA:   3'- cCAGUGG-CG-GCAGGUcGUCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 11446 0.67 0.470636
Target:  5'- gGGUCAg-GUCGgCCAGCAG-GGAGCg -3'
miRNA:   3'- -CCAGUggCGGCaGGUCGUCgCCUCGg -5'
31737 3' -60.4 NC_006938.1 + 31736 0.67 0.461113
Target:  5'- cGGaacaGCUcCCGcUCCAGCAGCucGAGCCa -3'
miRNA:   3'- -CCag--UGGcGGC-AGGUCGUCGc-CUCGG- -5'
31737 3' -60.4 NC_006938.1 + 24402 0.67 0.461113
Target:  5'- --cCACCGCCGUU--GCcuGCGGAcGCCu -3'
miRNA:   3'- ccaGUGGCGGCAGguCGu-CGCCU-CGG- -5'
31737 3' -60.4 NC_006938.1 + 12703 0.67 0.461113
Target:  5'- -cUCuCCGUCGgugCCgAGCuGGCGGAGCUc -3'
miRNA:   3'- ccAGuGGCGGCa--GG-UCG-UCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 17377 0.67 0.460166
Target:  5'- uGGUCAggcCCGCgCGcggaaacUCCAGgGGCuGcGAGCCg -3'
miRNA:   3'- -CCAGU---GGCG-GC-------AGGUCgUCG-C-CUCGG- -5'
31737 3' -60.4 NC_006938.1 + 33634 0.67 0.448887
Target:  5'- cGGUCgucccuccggcgauACCGCUGUCUGuCAGCGGgaGGCg -3'
miRNA:   3'- -CCAG--------------UGGCGGCAGGUcGUCGCC--UCGg -5'
31737 3' -60.4 NC_006938.1 + 42633 0.67 0.470636
Target:  5'- gGGUCACUGCUc-CCAGUAccaaaGGAGCUg -3'
miRNA:   3'- -CCAGUGGCGGcaGGUCGUcg---CCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 31800 0.66 0.489
Target:  5'- aGUCGUCGUCGUggaccucCCAGUGGCGGA-CCa -3'
miRNA:   3'- cCAGUGGCGGCA-------GGUCGUCGCCUcGG- -5'
31737 3' -60.4 NC_006938.1 + 7610 0.66 0.499784
Target:  5'- cGGUUGCCGaaGuucUCCAGCGGCaGGucGUCg -3'
miRNA:   3'- -CCAGUGGCggC---AGGUCGUCG-CCu-CGG- -5'
31737 3' -60.4 NC_006938.1 + 5573 0.66 0.509678
Target:  5'- ---aGCCGgaGUCCAGCgacuggAGCagGGAGCCg -3'
miRNA:   3'- ccagUGGCggCAGGUCG------UCG--CCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 43068 0.66 0.519652
Target:  5'- -aUCGCUGgcaacucgcCCGUUCAGCAGCaGGAuGUCg -3'
miRNA:   3'- ccAGUGGC---------GGCAGGUCGUCG-CCU-CGG- -5'
31737 3' -60.4 NC_006938.1 + 213 0.66 0.527688
Target:  5'- cGGcUCGCCGCCGcCCuucggaaccuuCGGCaGGuGCCg -3'
miRNA:   3'- -CC-AGUGGCGGCaGGuc---------GUCG-CCuCGG- -5'
31737 3' -60.4 NC_006938.1 + 12765 0.66 0.529704
Target:  5'- cGUCugCGaCCGcugggagcugcUCCAGgacggAGCGGAGCUc -3'
miRNA:   3'- cCAGugGC-GGC-----------AGGUCg----UCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 41938 1.12 0.000242
Target:  5'- uGGUCACCGCCGUCCAGCAGCGGAGCCu -3'
miRNA:   3'- -CCAGUGGCGGCAGGUCGUCGCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.