miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31737 3' -60.4 NC_006938.1 + 21577 0.66 0.499784
Target:  5'- uGGuUCACaagGCCGaCCAGUccGUGGAGCUc -3'
miRNA:   3'- -CC-AGUGg--CGGCaGGUCGu-CGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 37115 0.67 0.433174
Target:  5'- aGGUgCACCGCUGgcaacUCGGuCGGCGaGuGCCa -3'
miRNA:   3'- -CCA-GUGGCGGCa----GGUC-GUCGC-CuCGG- -5'
31737 3' -60.4 NC_006938.1 + 40785 0.67 0.442379
Target:  5'- uGUCAagGCCGUCCucCAGCGGuccaaggaGGCCc -3'
miRNA:   3'- cCAGUggCGGCAGGucGUCGCC--------UCGG- -5'
31737 3' -60.4 NC_006938.1 + 43330 0.67 0.442379
Target:  5'- -uUCACaGCCGUucuccauacUCGGCAGCGcGGCCu -3'
miRNA:   3'- ccAGUGgCGGCA---------GGUCGUCGCcUCGG- -5'
31737 3' -60.4 NC_006938.1 + 15440 0.67 0.442379
Target:  5'- cGUCG-CGUCGUCguGCAGaUGuGGGCCg -3'
miRNA:   3'- cCAGUgGCGGCAGguCGUC-GC-CUCGG- -5'
31737 3' -60.4 NC_006938.1 + 35920 0.67 0.451693
Target:  5'- cGUCAUCGgaCCGUUCGcCAGCGcGGCCg -3'
miRNA:   3'- cCAGUGGC--GGCAGGUcGUCGCcUCGG- -5'
31737 3' -60.4 NC_006938.1 + 39243 0.67 0.451693
Target:  5'- cGUCGCCGCCucgCCGGCaaacGGUGGuccguccaacGCCg -3'
miRNA:   3'- cCAGUGGCGGca-GGUCG----UCGCCu---------CGG- -5'
31737 3' -60.4 NC_006938.1 + 17265 0.66 0.480258
Target:  5'- cGGUCGCCaucaaCGUCC-GCcGCGcGGCCa -3'
miRNA:   3'- -CCAGUGGcg---GCAGGuCGuCGCcUCGG- -5'
31737 3' -60.4 NC_006938.1 + 50235 0.66 0.489976
Target:  5'- --aCACCGCCaUCCAGgccggggucCGGCGGGuCCg -3'
miRNA:   3'- ccaGUGGCGGcAGGUC---------GUCGCCUcGG- -5'
31737 3' -60.4 NC_006938.1 + 53555 0.67 0.424082
Target:  5'- uGUCACUgGCaCGUUCA-UGGCGGAGCUg -3'
miRNA:   3'- cCAGUGG-CG-GCAGGUcGUCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 36654 0.67 0.424082
Target:  5'- aGUUGCCGCCcuGUgaUgAGCGGCuucGGAGCCu -3'
miRNA:   3'- cCAGUGGCGG--CA--GgUCGUCG---CCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 61552 0.67 0.424082
Target:  5'- --aCACCGCCGaccacucuguaUCCucgcgcucaGGCGGCGGAuCCa -3'
miRNA:   3'- ccaGUGGCGGC-----------AGG---------UCGUCGCCUcGG- -5'
31737 3' -60.4 NC_006938.1 + 51375 0.76 0.121407
Target:  5'- cGGUCuucCCGCCGcUCCAGCAGUucGaGAGCg -3'
miRNA:   3'- -CCAGu--GGCGGC-AGGUCGUCG--C-CUCGg -5'
31737 3' -60.4 NC_006938.1 + 27505 0.72 0.214891
Target:  5'- cGUCACCGuUCGaugCCAGgAcuGCGGGGCCa -3'
miRNA:   3'- cCAGUGGC-GGCa--GGUCgU--CGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 51122 0.71 0.243377
Target:  5'- -cUCAUCGgUGUCCAGCuggcGCGGAuuGCCa -3'
miRNA:   3'- ccAGUGGCgGCAGGUCGu---CGCCU--CGG- -5'
31737 3' -60.4 NC_006938.1 + 63336 0.7 0.309681
Target:  5'- cGG-CACCuGCCGaagguUCCgaagGGCGGCGGcgAGCCg -3'
miRNA:   3'- -CCaGUGG-CGGC-----AGG----UCGUCGCC--UCGG- -5'
31737 3' -60.4 NC_006938.1 + 37521 0.7 0.309681
Target:  5'- aGGcCGCCGCCG-CUGGCaAGCuGGAcgagGCCg -3'
miRNA:   3'- -CCaGUGGCGGCaGGUCG-UCG-CCU----CGG- -5'
31737 3' -60.4 NC_006938.1 + 37059 0.69 0.324489
Target:  5'- uGUCACCGUgGgaccagaggccCCGGCAGCGuGAGaCCc -3'
miRNA:   3'- cCAGUGGCGgCa----------GGUCGUCGC-CUC-GG- -5'
31737 3' -60.4 NC_006938.1 + 29867 0.69 0.355664
Target:  5'- uGGaCGCgGCUGUgaUGGCcgAGCGGAGCCa -3'
miRNA:   3'- -CCaGUGgCGGCAg-GUCG--UCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 28397 0.68 0.397506
Target:  5'- cGGUCAaC-CCGgcaCCGGaguGGCGGGGCCa -3'
miRNA:   3'- -CCAGUgGcGGCa--GGUCg--UCGCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.