Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31737 | 3' | -60.4 | NC_006938.1 | + | 77 | 0.68 | 0.418682 |
Target: 5'- aGUCACCGCCccacucgauggggacGUUCAGCucGCGaGcGGCCu -3' miRNA: 3'- cCAGUGGCGG---------------CAGGUCGu-CGC-C-UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 213 | 0.66 | 0.527688 |
Target: 5'- cGGcUCGCCGCCGcCCuucggaaccuuCGGCaGGuGCCg -3' miRNA: 3'- -CC-AGUGGCGGCaGGuc---------GUCG-CCuCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 464 | 0.73 | 0.194205 |
Target: 5'- --cCACUGCCGuauUCCAGCGGCGacAGCCc -3' miRNA: 3'- ccaGUGGCGGC---AGGUCGUCGCc-UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 1835 | 0.77 | 0.100643 |
Target: 5'- aGUCGCCGuccCCGUCCAGgAGgagGGAGCCg -3' miRNA: 3'- cCAGUGGC---GGCAGGUCgUCg--CCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 4551 | 0.67 | 0.424986 |
Target: 5'- aGG-CACCGUCGUCggccacgaggauugaGGCAGCgcgcuGGAGCUc -3' miRNA: 3'- -CCaGUGGCGGCAGg--------------UCGUCG-----CCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 5573 | 0.66 | 0.509678 |
Target: 5'- ---aGCCGgaGUCCAGCgacuggAGCagGGAGCCg -3' miRNA: 3'- ccagUGGCggCAGGUCG------UCG--CCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 7610 | 0.66 | 0.499784 |
Target: 5'- cGGUUGCCGaaGuucUCCAGCGGCaGGucGUCg -3' miRNA: 3'- -CCAGUGGCggC---AGGUCGUCG-CCu-CGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 9492 | 0.66 | 0.519652 |
Target: 5'- -aUCGCCGCCaccaaUCCcuGCGGCGaGcAGCCc -3' miRNA: 3'- ccAGUGGCGGc----AGGu-CGUCGC-C-UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 10737 | 0.68 | 0.406245 |
Target: 5'- cGUUGCUGCCGUCCGuGguGCcaauGGCCu -3' miRNA: 3'- cCAGUGGCGGCAGGU-CguCGcc--UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 11446 | 0.67 | 0.470636 |
Target: 5'- gGGUCAg-GUCGgCCAGCAG-GGAGCg -3' miRNA: 3'- -CCAGUggCGGCaGGUCGUCgCCUCGg -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 12703 | 0.67 | 0.461113 |
Target: 5'- -cUCuCCGUCGgugCCgAGCuGGCGGAGCUc -3' miRNA: 3'- ccAGuGGCGGCa--GG-UCG-UCGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 12765 | 0.66 | 0.529704 |
Target: 5'- cGUCugCGaCCGcugggagcugcUCCAGgacggAGCGGAGCUc -3' miRNA: 3'- cCAGugGC-GGC-----------AGGUCg----UCGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 13948 | 0.66 | 0.499784 |
Target: 5'- -cUCACCGU--UCCG--AGCGGGGCCg -3' miRNA: 3'- ccAGUGGCGgcAGGUcgUCGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 15222 | 0.73 | 0.204321 |
Target: 5'- cGUCACCGCCGcCCgAGCcGgGGuucaGGCCg -3' miRNA: 3'- cCAGUGGCGGCaGG-UCGuCgCC----UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 15440 | 0.67 | 0.442379 |
Target: 5'- cGUCG-CGUCGUCguGCAGaUGuGGGCCg -3' miRNA: 3'- cCAGUgGCGGCAGguCGUC-GC-CUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 17199 | 0.69 | 0.36378 |
Target: 5'- --gCACCGCCGUCCGcGUAGUccgucuGGAucgGCCc -3' miRNA: 3'- ccaGUGGCGGCAGGU-CGUCG------CCU---CGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 17265 | 0.66 | 0.480258 |
Target: 5'- cGGUCGCCaucaaCGUCC-GCcGCGcGGCCa -3' miRNA: 3'- -CCAGUGGcg---GCAGGuCGuCGCcUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 17377 | 0.67 | 0.460166 |
Target: 5'- uGGUCAggcCCGCgCGcggaaacUCCAGgGGCuGcGAGCCg -3' miRNA: 3'- -CCAGU---GGCG-GC-------AGGUCgUCG-C-CUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 21577 | 0.66 | 0.499784 |
Target: 5'- uGGuUCACaagGCCGaCCAGUccGUGGAGCUc -3' miRNA: 3'- -CC-AGUGg--CGGCaGGUCGu-CGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 22917 | 0.66 | 0.499784 |
Target: 5'- aGG-CACUGCUGgaCCAGCGgauGCGGAcgauGCCc -3' miRNA: 3'- -CCaGUGGCGGCa-GGUCGU---CGCCU----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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