miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31737 3' -60.4 NC_006938.1 + 63336 0.7 0.309681
Target:  5'- cGG-CACCuGCCGaagguUCCgaagGGCGGCGGcgAGCCg -3'
miRNA:   3'- -CCaGUGG-CGGC-----AGG----UCGUCGCC--UCGG- -5'
31737 3' -60.4 NC_006938.1 + 63099 0.79 0.072639
Target:  5'- uGUCGCCGCUGgaauaCGGCAGUGGGGCa -3'
miRNA:   3'- cCAGUGGCGGCag---GUCGUCGCCUCGg -5'
31737 3' -60.4 NC_006938.1 + 61552 0.67 0.424082
Target:  5'- --aCACCGCCGaccacucuguaUCCucgcgcucaGGCGGCGGAuCCa -3'
miRNA:   3'- ccaGUGGCGGC-----------AGG---------UCGUCGCCUcGG- -5'
31737 3' -60.4 NC_006938.1 + 60814 0.69 0.332088
Target:  5'- --cCGCCGaguagaccCCGUCCaggauGGCGGCGGAGUg -3'
miRNA:   3'- ccaGUGGC--------GGCAGG-----UCGUCGCCUCGg -5'
31737 3' -60.4 NC_006938.1 + 58048 0.7 0.288445
Target:  5'- uGG-CAUUGCUG-CCAGCGGCGGguGGCg -3'
miRNA:   3'- -CCaGUGGCGGCaGGUCGUCGCC--UCGg -5'
31737 3' -60.4 NC_006938.1 + 53555 0.67 0.424082
Target:  5'- uGUCACUgGCaCGUUCA-UGGCGGAGCUg -3'
miRNA:   3'- cCAGUGG-CG-GCAGGUcGUCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 53030 0.66 0.529704
Target:  5'- -cUCGCCGCgcaGUCUGGCaccacGGUGGAGgCa -3'
miRNA:   3'- ccAGUGGCGg--CAGGUCG-----UCGCCUCgG- -5'
31737 3' -60.4 NC_006938.1 + 51375 0.76 0.121407
Target:  5'- cGGUCuucCCGCCGcUCCAGCAGUucGaGAGCg -3'
miRNA:   3'- -CCAGu--GGCGGC-AGGUCGUCG--C-CUCGg -5'
31737 3' -60.4 NC_006938.1 + 51122 0.71 0.243377
Target:  5'- -cUCAUCGgUGUCCAGCuggcGCGGAuuGCCa -3'
miRNA:   3'- ccAGUGGCgGCAGGUCGu---CGCCU--CGG- -5'
31737 3' -60.4 NC_006938.1 + 50347 0.66 0.508684
Target:  5'- cGGUCaACCGCUccaUCCgagacaucggcacGGgAGCGGAGgCCa -3'
miRNA:   3'- -CCAG-UGGCGGc--AGG-------------UCgUCGCCUC-GG- -5'
31737 3' -60.4 NC_006938.1 + 50235 0.66 0.489976
Target:  5'- --aCACCGCCaUCCAGgccggggucCGGCGGGuCCg -3'
miRNA:   3'- ccaGUGGCGGcAGGUC---------GUCGCCUcGG- -5'
31737 3' -60.4 NC_006938.1 + 45362 0.67 0.433174
Target:  5'- cGUCAUCGgCGUUCAGCuGGUGuccGGCCg -3'
miRNA:   3'- cCAGUGGCgGCAGGUCG-UCGCc--UCGG- -5'
31737 3' -60.4 NC_006938.1 + 45055 0.73 0.18453
Target:  5'- aGGcCACCGUCGUCCGGCcgguagauGCGccGCCa -3'
miRNA:   3'- -CCaGUGGCGGCAGGUCGu-------CGCcuCGG- -5'
31737 3' -60.4 NC_006938.1 + 43831 0.72 0.225926
Target:  5'- --gCACCG-CGUCgGGCAGCGGuGGCUg -3'
miRNA:   3'- ccaGUGGCgGCAGgUCGUCGCC-UCGG- -5'
31737 3' -60.4 NC_006938.1 + 43330 0.67 0.442379
Target:  5'- -uUCACaGCCGUucuccauacUCGGCAGCGcGGCCu -3'
miRNA:   3'- ccAGUGgCGGCA---------GGUCGUCGCcUCGG- -5'
31737 3' -60.4 NC_006938.1 + 43068 0.66 0.519652
Target:  5'- -aUCGCUGgcaacucgcCCGUUCAGCAGCaGGAuGUCg -3'
miRNA:   3'- ccAGUGGC---------GGCAGGUCGUCG-CCU-CGG- -5'
31737 3' -60.4 NC_006938.1 + 42868 0.68 0.386326
Target:  5'- uGUCGCgCgGCCuGUCCcugguucucaccacGGCGGCGGcGCCa -3'
miRNA:   3'- cCAGUG-G-CGG-CAGG--------------UCGUCGCCuCGG- -5'
31737 3' -60.4 NC_006938.1 + 42633 0.67 0.470636
Target:  5'- gGGUCACUGCUc-CCAGUAccaaaGGAGCUg -3'
miRNA:   3'- -CCAGUGGCGGcaGGUCGUcg---CCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 41938 1.12 0.000242
Target:  5'- uGGUCACCGCCGUCCAGCAGCGGAGCCu -3'
miRNA:   3'- -CCAGUGGCGGCAGGUCGUCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 40785 0.67 0.442379
Target:  5'- uGUCAagGCCGUCCucCAGCGGuccaaggaGGCCc -3'
miRNA:   3'- cCAGUggCGGCAGGucGUCGCC--------UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.