miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31737 3' -60.4 NC_006938.1 + 41938 1.12 0.000242
Target:  5'- uGGUCACCGCCGUCCAGCAGCGGAGCCu -3'
miRNA:   3'- -CCAGUGGCGGCAGGUCGUCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 63099 0.79 0.072639
Target:  5'- uGUCGCCGCUGgaauaCGGCAGUGGGGCa -3'
miRNA:   3'- cCAGUGGCGGCag---GUCGUCGCCUCGg -5'
31737 3' -60.4 NC_006938.1 + 1835 0.77 0.100643
Target:  5'- aGUCGCCGuccCCGUCCAGgAGgagGGAGCCg -3'
miRNA:   3'- cCAGUGGC---GGCAGGUCgUCg--CCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 51375 0.76 0.121407
Target:  5'- cGGUCuucCCGCCGcUCCAGCAGUucGaGAGCg -3'
miRNA:   3'- -CCAGu--GGCGGC-AGGUCGUCG--C-CUCGg -5'
31737 3' -60.4 NC_006938.1 + 45055 0.73 0.18453
Target:  5'- aGGcCACCGUCGUCCGGCcgguagauGCGccGCCa -3'
miRNA:   3'- -CCaGUGGCGGCAGGUCGu-------CGCcuCGG- -5'
31737 3' -60.4 NC_006938.1 + 464 0.73 0.194205
Target:  5'- --cCACUGCCGuauUCCAGCGGCGacAGCCc -3'
miRNA:   3'- ccaGUGGCGGC---AGGUCGUCGCc-UCGG- -5'
31737 3' -60.4 NC_006938.1 + 15222 0.73 0.204321
Target:  5'- cGUCACCGCCGcCCgAGCcGgGGuucaGGCCg -3'
miRNA:   3'- cCAGUGGCGGCaGG-UCGuCgCC----UCGG- -5'
31737 3' -60.4 NC_006938.1 + 24523 0.72 0.209549
Target:  5'- cGGU-GCCGUCGUCCuGCacAGCGGcaguGCCa -3'
miRNA:   3'- -CCAgUGGCGGCAGGuCG--UCGCCu---CGG- -5'
31737 3' -60.4 NC_006938.1 + 27505 0.72 0.214891
Target:  5'- cGUCACCGuUCGaugCCAGgAcuGCGGGGCCa -3'
miRNA:   3'- cCAGUGGC-GGCa--GGUCgU--CGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 34607 0.72 0.225926
Target:  5'- uGUC-CCGCCcaggCCAGCGGCcucGAGCCu -3'
miRNA:   3'- cCAGuGGCGGca--GGUCGUCGc--CUCGG- -5'
31737 3' -60.4 NC_006938.1 + 43831 0.72 0.225926
Target:  5'- --gCACCG-CGUCgGGCAGCGGuGGCUg -3'
miRNA:   3'- ccaGUGGCgGCAGgUCGUCGCC-UCGG- -5'
31737 3' -60.4 NC_006938.1 + 51122 0.71 0.243377
Target:  5'- -cUCAUCGgUGUCCAGCuggcGCGGAuuGCCa -3'
miRNA:   3'- ccAGUGGCgGCAGGUCGu---CGCCU--CGG- -5'
31737 3' -60.4 NC_006938.1 + 39279 0.71 0.249438
Target:  5'- aGG-CGCUuguuGCCGUCCaugAGCAGCGG-GUCg -3'
miRNA:   3'- -CCaGUGG----CGGCAGG---UCGUCGCCuCGG- -5'
31737 3' -60.4 NC_006938.1 + 58048 0.7 0.288445
Target:  5'- uGG-CAUUGCUG-CCAGCGGCGGguGGCg -3'
miRNA:   3'- -CCaGUGGCGGCaGGUCGUCGCC--UCGg -5'
31737 3' -60.4 NC_006938.1 + 31423 0.7 0.295394
Target:  5'- uGGUCugCGa-GcCgGGCAGgGGAGCCc -3'
miRNA:   3'- -CCAGugGCggCaGgUCGUCgCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 63336 0.7 0.309681
Target:  5'- cGG-CACCuGCCGaagguUCCgaagGGCGGCGGcgAGCCg -3'
miRNA:   3'- -CCaGUGG-CGGC-----AGG----UCGUCGCC--UCGG- -5'
31737 3' -60.4 NC_006938.1 + 37521 0.7 0.309681
Target:  5'- aGGcCGCCGCCG-CUGGCaAGCuGGAcgagGCCg -3'
miRNA:   3'- -CCaGUGGCGGCaGGUCG-UCG-CCU----CGG- -5'
31737 3' -60.4 NC_006938.1 + 37059 0.69 0.324489
Target:  5'- uGUCACCGUgGgaccagaggccCCGGCAGCGuGAGaCCc -3'
miRNA:   3'- cCAGUGGCGgCa----------GGUCGUCGC-CUC-GG- -5'
31737 3' -60.4 NC_006938.1 + 60814 0.69 0.332088
Target:  5'- --cCGCCGaguagaccCCGUCCaggauGGCGGCGGAGUg -3'
miRNA:   3'- ccaGUGGC--------GGCAGG-----UCGUCGCCUCGg -5'
31737 3' -60.4 NC_006938.1 + 29867 0.69 0.355664
Target:  5'- uGGaCGCgGCUGUgaUGGCcgAGCGGAGCCa -3'
miRNA:   3'- -CCaGUGgCGGCAg-GUCG--UCGCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.