Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31737 | 3' | -60.4 | NC_006938.1 | + | 26034 | 0.66 | 0.529704 |
Target: 5'- cGGccUCGuCCaGCUugCCAGCGGCGGcGGCCu -3' miRNA: 3'- -CC--AGU-GG-CGGcaGGUCGUCGCC-UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 77 | 0.68 | 0.418682 |
Target: 5'- aGUCACCGCCccacucgauggggacGUUCAGCucGCGaGcGGCCu -3' miRNA: 3'- cCAGUGGCGG---------------CAGGUCGu-CGC-C-UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 42868 | 0.68 | 0.386326 |
Target: 5'- uGUCGCgCgGCCuGUCCcugguucucaccacGGCGGCGGcGCCa -3' miRNA: 3'- cCAGUG-G-CGG-CAGG--------------UCGUCGCCuCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 41938 | 1.12 | 0.000242 |
Target: 5'- uGGUCACCGCCGUCCAGCAGCGGAGCCu -3' miRNA: 3'- -CCAGUGGCGGCAGGUCGUCGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 5573 | 0.66 | 0.509678 |
Target: 5'- ---aGCCGgaGUCCAGCgacuggAGCagGGAGCCg -3' miRNA: 3'- ccagUGGCggCAGGUCG------UCG--CCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 7610 | 0.66 | 0.499784 |
Target: 5'- cGGUUGCCGaaGuucUCCAGCGGCaGGucGUCg -3' miRNA: 3'- -CCAGUGGCggC---AGGUCGUCG-CCu-CGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 42633 | 0.67 | 0.470636 |
Target: 5'- gGGUCACUGCUc-CCAGUAccaaaGGAGCUg -3' miRNA: 3'- -CCAGUGGCGGcaGGUCGUcg---CCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 11446 | 0.67 | 0.470636 |
Target: 5'- gGGUCAg-GUCGgCCAGCAG-GGAGCg -3' miRNA: 3'- -CCAGUggCGGCaGGUCGUCgCCUCGg -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 12703 | 0.67 | 0.461113 |
Target: 5'- -cUCuCCGUCGgugCCgAGCuGGCGGAGCUc -3' miRNA: 3'- ccAGuGGCGGCa--GG-UCG-UCGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 4551 | 0.67 | 0.424986 |
Target: 5'- aGG-CACCGUCGUCggccacgaggauugaGGCAGCgcgcuGGAGCUc -3' miRNA: 3'- -CCaGUGGCGGCAGg--------------UCGUCG-----CCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 33634 | 0.67 | 0.448887 |
Target: 5'- cGGUCgucccuccggcgauACCGCUGUCUGuCAGCGGgaGGCg -3' miRNA: 3'- -CCAG--------------UGGCGGCAGGUcGUCGCC--UCGg -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 24402 | 0.67 | 0.461113 |
Target: 5'- --cCACCGCCGUU--GCcuGCGGAcGCCu -3' miRNA: 3'- ccaGUGGCGGCAGguCGu-CGCCU-CGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 12765 | 0.66 | 0.529704 |
Target: 5'- cGUCugCGaCCGcugggagcugcUCCAGgacggAGCGGAGCUc -3' miRNA: 3'- cCAGugGC-GGC-----------AGGUCg----UCGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 23050 | 0.67 | 0.442379 |
Target: 5'- cGUCcUCGUCGUCCGGaucggaggaAGCGGGGUUc -3' miRNA: 3'- cCAGuGGCGGCAGGUCg--------UCGCCUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 213 | 0.66 | 0.527688 |
Target: 5'- cGGcUCGCCGCCGcCCuucggaaccuuCGGCaGGuGCCg -3' miRNA: 3'- -CC-AGUGGCGGCaGGuc---------GUCG-CCuCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 31736 | 0.67 | 0.461113 |
Target: 5'- cGGaacaGCUcCCGcUCCAGCAGCucGAGCCa -3' miRNA: 3'- -CCag--UGGcGGC-AGGUCGUCGc-CUCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 45362 | 0.67 | 0.433174 |
Target: 5'- cGUCAUCGgCGUUCAGCuGGUGuccGGCCg -3' miRNA: 3'- cCAGUGGCgGCAGGUCG-UCGCc--UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 10737 | 0.68 | 0.406245 |
Target: 5'- cGUUGCUGCCGUCCGuGguGCcaauGGCCu -3' miRNA: 3'- cCAGUGGCGGCAGGU-CguCGcc--UCGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 43068 | 0.66 | 0.519652 |
Target: 5'- -aUCGCUGgcaacucgcCCGUUCAGCAGCaGGAuGUCg -3' miRNA: 3'- ccAGUGGC---------GGCAGGUCGUCG-CCU-CGG- -5' |
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31737 | 3' | -60.4 | NC_006938.1 | + | 31800 | 0.66 | 0.489 |
Target: 5'- aGUCGUCGUCGUggaccucCCAGUGGCGGA-CCa -3' miRNA: 3'- cCAGUGGCGGCA-------GGUCGUCGCCUcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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