miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31742 3' -53.7 NC_006938.1 + 7776 0.66 0.838027
Target:  5'- gGGCCUugguGGCGUCguaGAUGAUCUuGCCa -3'
miRNA:   3'- -UCGGA----UUGUAGug-CUACUGGAcCGGc -5'
31742 3' -53.7 NC_006938.1 + 18133 0.66 0.838027
Target:  5'- cGUCUAugGCAUCGCaGAUGAaCUGcGCCu -3'
miRNA:   3'- uCGGAU--UGUAGUG-CUACUgGAC-CGGc -5'
31742 3' -53.7 NC_006938.1 + 48010 0.66 0.838027
Target:  5'- cGCCUccGGCAUCACGcucgacaaGACCUcGGgCGg -3'
miRNA:   3'- uCGGA--UUGUAGUGCua------CUGGA-CCgGC- -5'
31742 3' -53.7 NC_006938.1 + 30013 0.66 0.832668
Target:  5'- uGGCCgUGGCAgcUCAUGAgccaGGCCUcgccauacaacgccaGGCCGa -3'
miRNA:   3'- -UCGG-AUUGU--AGUGCUa---CUGGA---------------CCGGC- -5'
31742 3' -53.7 NC_006938.1 + 27006 0.66 0.832668
Target:  5'- aGGCCUgccgcgcggaacgccGACGucUCGCGAcgGGCCaGGUCGg -3'
miRNA:   3'- -UCGGA---------------UUGU--AGUGCUa-CUGGaCCGGC- -5'
31742 3' -53.7 NC_006938.1 + 19050 0.66 0.819867
Target:  5'- cGGCC-AugGUCGCGGcgGACgaGGCgGg -3'
miRNA:   3'- -UCGGaUugUAGUGCUa-CUGgaCCGgC- -5'
31742 3' -53.7 NC_006938.1 + 50908 0.66 0.819867
Target:  5'- cGCCUuccGCGagGCGGccgagGGCCUGGaCCGa -3'
miRNA:   3'- uCGGAu--UGUagUGCUa----CUGGACC-GGC- -5'
31742 3' -53.7 NC_006938.1 + 53039 0.66 0.819867
Target:  5'- cAGUCUGGCAcCACGGUGgaggcaGCCUG-CCa -3'
miRNA:   3'- -UCGGAUUGUaGUGCUAC------UGGACcGGc -5'
31742 3' -53.7 NC_006938.1 + 54565 0.66 0.819867
Target:  5'- uGCUUGGCGcgcucCAUGAUGgaGCCgUGGCCGu -3'
miRNA:   3'- uCGGAUUGUa----GUGCUAC--UGG-ACCGGC- -5'
31742 3' -53.7 NC_006938.1 + 55913 0.66 0.818938
Target:  5'- uGGCCgGGCAgcccuucUCGCuGAgGACCUgGGCCGc -3'
miRNA:   3'- -UCGGaUUGU-------AGUG-CUaCUGGA-CCGGC- -5'
31742 3' -53.7 NC_006938.1 + 18513 0.66 0.810484
Target:  5'- cGGCCgGACG--ACGGUGGCCUcugggcGGCCc -3'
miRNA:   3'- -UCGGaUUGUagUGCUACUGGA------CCGGc -5'
31742 3' -53.7 NC_006938.1 + 19421 0.66 0.810484
Target:  5'- cAGCC--ACAUUccUGAUGcCCUGGCCa -3'
miRNA:   3'- -UCGGauUGUAGu-GCUACuGGACCGGc -5'
31742 3' -53.7 NC_006938.1 + 5075 0.66 0.810484
Target:  5'- gGGCUggugcguaUGGCAUCAgGucccUGGCCaGGCCGa -3'
miRNA:   3'- -UCGG--------AUUGUAGUgCu---ACUGGaCCGGC- -5'
31742 3' -53.7 NC_006938.1 + 44413 0.66 0.804762
Target:  5'- aGGCCgguggGGCAUucagCGCGGcagcuaacccaacgGACCUGGCCu -3'
miRNA:   3'- -UCGGa----UUGUA----GUGCUa-------------CUGGACCGGc -5'
31742 3' -53.7 NC_006938.1 + 22291 0.66 0.80091
Target:  5'- cGCCgggAGCGcUCACGA--GCgCUGGCUGg -3'
miRNA:   3'- uCGGa--UUGU-AGUGCUacUG-GACCGGC- -5'
31742 3' -53.7 NC_006938.1 + 39073 0.66 0.80091
Target:  5'- --gCUGGCAUgUACGA-GACCUGGCUc -3'
miRNA:   3'- ucgGAUUGUA-GUGCUaCUGGACCGGc -5'
31742 3' -53.7 NC_006938.1 + 62994 0.67 0.781241
Target:  5'- uGGCCUuggguucccAGCG--AUGGUGACCaUGGCCa -3'
miRNA:   3'- -UCGGA---------UUGUagUGCUACUGG-ACCGGc -5'
31742 3' -53.7 NC_006938.1 + 16513 0.67 0.771165
Target:  5'- cGCCaugGACGUCugucgcACGAUGAagcUgUGGCCGg -3'
miRNA:   3'- uCGGa--UUGUAG------UGCUACU---GgACCGGC- -5'
31742 3' -53.7 NC_006938.1 + 23133 0.67 0.760945
Target:  5'- aAGUCcGGCGcggCGuCGGUGAUCUGGCCu -3'
miRNA:   3'- -UCGGaUUGUa--GU-GCUACUGGACCGGc -5'
31742 3' -53.7 NC_006938.1 + 40046 0.67 0.760945
Target:  5'- uGGCCUGACGUC-CGGUG-UC-GGCUa -3'
miRNA:   3'- -UCGGAUUGUAGuGCUACuGGaCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.