Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31742 | 3' | -53.7 | NC_006938.1 | + | 3521 | 0.71 | 0.554319 |
Target: 5'- cGGCCUggUAcCACGgcGGCaaGGCCGg -3' miRNA: 3'- -UCGGAuuGUaGUGCuaCUGgaCCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 5075 | 0.66 | 0.810484 |
Target: 5'- gGGCUggugcguaUGGCAUCAgGucccUGGCCaGGCCGa -3' miRNA: 3'- -UCGG--------AUUGUAGUgCu---ACUGGaCCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 6241 | 0.71 | 0.522136 |
Target: 5'- aAGCCccGCGcuUCACGAacuUGAUCUGGUCGu -3' miRNA: 3'- -UCGGauUGU--AGUGCU---ACUGGACCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 7776 | 0.66 | 0.838027 |
Target: 5'- gGGCCUugguGGCGUCguaGAUGAUCUuGCCa -3' miRNA: 3'- -UCGGA----UUGUAGug-CUACUGGAcCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 12136 | 0.67 | 0.74955 |
Target: 5'- gAGCaggaUGGCAUUguuggcagcggcgGCGAUGGCC-GGCCa -3' miRNA: 3'- -UCGg---AUUGUAG-------------UGCUACUGGaCCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 12577 | 0.76 | 0.277392 |
Target: 5'- uGCCUGcaggacguuguuccGCAgCACGGUGaacGCCUGGCCGa -3' miRNA: 3'- uCGGAU--------------UGUaGUGCUAC---UGGACCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 13116 | 0.67 | 0.760945 |
Target: 5'- aAGCCUcccgAAUGUCugGAUGACa--GCCGc -3' miRNA: 3'- -UCGGA----UUGUAGugCUACUGgacCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 15762 | 0.68 | 0.697232 |
Target: 5'- cGCCaGACGaCAUGu--ACCUGGCCGg -3' miRNA: 3'- uCGGaUUGUaGUGCuacUGGACCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 16513 | 0.67 | 0.771165 |
Target: 5'- cGCCaugGACGUCugucgcACGAUGAagcUgUGGCCGg -3' miRNA: 3'- uCGGa--UUGUAG------UGCUACU---GgACCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 18133 | 0.66 | 0.838027 |
Target: 5'- cGUCUAugGCAUCGCaGAUGAaCUGcGCCu -3' miRNA: 3'- uCGGAU--UGUAGUG-CUACUgGAC-CGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 18513 | 0.66 | 0.810484 |
Target: 5'- cGGCCgGACG--ACGGUGGCCUcugggcGGCCc -3' miRNA: 3'- -UCGGaUUGUagUGCUACUGGA------CCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 19050 | 0.66 | 0.819867 |
Target: 5'- cGGCC-AugGUCGCGGcgGACgaGGCgGg -3' miRNA: 3'- -UCGGaUugUAGUGCUa-CUGgaCCGgC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 19421 | 0.66 | 0.810484 |
Target: 5'- cAGCC--ACAUUccUGAUGcCCUGGCCa -3' miRNA: 3'- -UCGGauUGUAGu-GCUACuGGACCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 22291 | 0.66 | 0.80091 |
Target: 5'- cGCCgggAGCGcUCACGA--GCgCUGGCUGg -3' miRNA: 3'- uCGGa--UUGU-AGUGCUacUG-GACCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 23133 | 0.67 | 0.760945 |
Target: 5'- aAGUCcGGCGcggCGuCGGUGAUCUGGCCu -3' miRNA: 3'- -UCGGaUUGUa--GU-GCUACUGGACCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 26506 | 0.69 | 0.642271 |
Target: 5'- gGGCCUcugguccCACGGUGACaggGGCCGg -3' miRNA: 3'- -UCGGAuugua--GUGCUACUGga-CCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 27006 | 0.66 | 0.832668 |
Target: 5'- aGGCCUgccgcgcggaacgccGACGucUCGCGAcgGGCCaGGUCGg -3' miRNA: 3'- -UCGGA---------------UUGU--AGUGCUa-CUGGaCCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 29041 | 0.67 | 0.740117 |
Target: 5'- cGCCgauCGUCACcaguGUGuCCUGGCCc -3' miRNA: 3'- uCGGauuGUAGUGc---UACuGGACCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 30013 | 0.66 | 0.832668 |
Target: 5'- uGGCCgUGGCAgcUCAUGAgccaGGCCUcgccauacaacgccaGGCCGa -3' miRNA: 3'- -UCGG-AUUGU--AGUGCUa---CUGGA---------------CCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 33527 | 0.77 | 0.252241 |
Target: 5'- cGGCCUGGCGUUguaugGCGA-GGCCUGGCUc -3' miRNA: 3'- -UCGGAUUGUAG-----UGCUaCUGGACCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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