Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31742 | 3' | -53.7 | NC_006938.1 | + | 62994 | 0.67 | 0.781241 |
Target: 5'- uGGCCUuggguucccAGCG--AUGGUGACCaUGGCCa -3' miRNA: 3'- -UCGGA---------UUGUagUGCUACUGG-ACCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 62614 | 0.7 | 0.598064 |
Target: 5'- uGCUUGACGUaGCGGagGACCUcGGCCa -3' miRNA: 3'- uCGGAUUGUAgUGCUa-CUGGA-CCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 57815 | 0.68 | 0.708077 |
Target: 5'- cGGCC--ACGUCugGugGUGGCCUGGgCu -3' miRNA: 3'- -UCGGauUGUAGugC--UACUGGACCgGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 55913 | 0.66 | 0.818938 |
Target: 5'- uGGCCgGGCAgcccuucUCGCuGAgGACCUgGGCCGc -3' miRNA: 3'- -UCGGaUUGU-------AGUG-CUaCUGGA-CCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 55522 | 0.67 | 0.760945 |
Target: 5'- cGUC-AGCAUCAUGuccGGCUUGGCCu -3' miRNA: 3'- uCGGaUUGUAGUGCua-CUGGACCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 54565 | 0.66 | 0.819867 |
Target: 5'- uGCUUGGCGcgcucCAUGAUGgaGCCgUGGCCGu -3' miRNA: 3'- uCGGAUUGUa----GUGCUAC--UGG-ACCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 53039 | 0.66 | 0.819867 |
Target: 5'- cAGUCUGGCAcCACGGUGgaggcaGCCUG-CCa -3' miRNA: 3'- -UCGGAUUGUaGUGCUAC------UGGACcGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 50908 | 0.66 | 0.819867 |
Target: 5'- cGCCUuccGCGagGCGGccgagGGCCUGGaCCGa -3' miRNA: 3'- uCGGAu--UGUagUGCUa----CUGGACC-GGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 48010 | 0.66 | 0.838027 |
Target: 5'- cGCCUccGGCAUCACGcucgacaaGACCUcGGgCGg -3' miRNA: 3'- uCGGA--UUGUAGUGCua------CUGGA-CCgGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 46509 | 0.69 | 0.631208 |
Target: 5'- uGCC-AGCugcuCGAUGACCUcGGCCGc -3' miRNA: 3'- uCGGaUUGuaguGCUACUGGA-CCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 45631 | 0.69 | 0.67536 |
Target: 5'- cGCCUuu-GUCACGAccuaccUGACCgaucgaGGCCGg -3' miRNA: 3'- uCGGAuugUAGUGCU------ACUGGa-----CCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 44413 | 0.66 | 0.804762 |
Target: 5'- aGGCCgguggGGCAUucagCGCGGcagcuaacccaacgGACCUGGCCu -3' miRNA: 3'- -UCGGa----UUGUA----GUGCUa-------------CUGGACCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 40046 | 0.67 | 0.760945 |
Target: 5'- uGGCCUGACGUC-CGGUG-UC-GGCUa -3' miRNA: 3'- -UCGGAUUGUAGuGCUACuGGaCCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 39337 | 0.68 | 0.697232 |
Target: 5'- uGCCgAGCuUCACGAUugccacGGCCUGGCg- -3' miRNA: 3'- uCGGaUUGuAGUGCUA------CUGGACCGgc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 39073 | 0.66 | 0.80091 |
Target: 5'- --gCUGGCAUgUACGA-GACCUGGCUc -3' miRNA: 3'- ucgGAUUGUA-GUGCUaCUGGACCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 38622 | 1.1 | 0.00146 |
Target: 5'- gAGCCUAACAUCACGAUGACCUGGCCGa -3' miRNA: 3'- -UCGGAUUGUAGUGCUACUGGACCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 38611 | 0.7 | 0.596962 |
Target: 5'- gAGCCgcAACAacucCugGAacaccacUGACCUGGCCGc -3' miRNA: 3'- -UCGGa-UUGUa---GugCU-------ACUGGACCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 33527 | 0.77 | 0.252241 |
Target: 5'- cGGCCUGGCGUUguaugGCGA-GGCCUGGCUc -3' miRNA: 3'- -UCGGAUUGUAG-----UGCUaCUGGACCGGc -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 30013 | 0.66 | 0.832668 |
Target: 5'- uGGCCgUGGCAgcUCAUGAgccaGGCCUcgccauacaacgccaGGCCGa -3' miRNA: 3'- -UCGG-AUUGU--AGUGCUa---CUGGA---------------CCGGC- -5' |
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31742 | 3' | -53.7 | NC_006938.1 | + | 29041 | 0.67 | 0.740117 |
Target: 5'- cGCCgauCGUCACcaguGUGuCCUGGCCc -3' miRNA: 3'- uCGGauuGUAGUGc---UACuGGACCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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