Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31747 | 5' | -59.5 | NC_006938.1 | + | 50178 | 0.67 | 0.471144 |
Target: 5'- --aCGCGCGcuCGgagaCCAGGUAGAACa -3' miRNA: 3'- cggGCGCGCuuGCg---GGUCCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 59230 | 0.67 | 0.451917 |
Target: 5'- aGCUCG-GCGAGCGCggucuCCAGGCGcGggUUc -3' miRNA: 3'- -CGGGCgCGCUUGCG-----GGUCCGU-CuuGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 27993 | 0.67 | 0.442465 |
Target: 5'- -gUCGCGCGGucgucGCGCCCuuggcaAGGCGGcGCUu -3' miRNA: 3'- cgGGCGCGCU-----UGCGGG------UCCGUCuUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 30124 | 0.67 | 0.441526 |
Target: 5'- uGCCUGgGCGuuCGCgCGGGCAGuuggaccAGCUg -3' miRNA: 3'- -CGGGCgCGCuuGCGgGUCCGUC-------UUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 27348 | 0.68 | 0.433127 |
Target: 5'- gGUCCGCGagacCGAguACaCCCAGGCAGAc-- -3' miRNA: 3'- -CGGGCGC----GCU--UGcGGGUCCGUCUuga -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 63470 | 0.68 | 0.433127 |
Target: 5'- cGCUCGCGagcuGAACGUCCccaucgagugGGGCGGuGACUg -3' miRNA: 3'- -CGGGCGCg---CUUGCGGG----------UCCGUC-UUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 46060 | 0.68 | 0.423904 |
Target: 5'- aCCCagGUGaaucuGGugGCCCAGGCAGAcgGCa -3' miRNA: 3'- cGGG--CGCg----CUugCGGGUCCGUCU--UGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 33946 | 0.68 | 0.414799 |
Target: 5'- uGCCagcggGCGCGggUGCaggccggacaguCCAGGuCGGAGCa -3' miRNA: 3'- -CGGg----CGCGCuuGCG------------GGUCC-GUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 39924 | 0.68 | 0.396955 |
Target: 5'- gGCUCGUgggGCGGggccACGCUCAguGGCGGAGCg -3' miRNA: 3'- -CGGGCG---CGCU----UGCGGGU--CCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 51559 | 0.68 | 0.396955 |
Target: 5'- cGCCaucgaggGCGCGGuccggguUGUCCAGGCAGGugUc -3' miRNA: 3'- -CGGg------CGCGCUu------GCGGGUCCGUCUugA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 50689 | 0.68 | 0.388221 |
Target: 5'- cCCCG-GCGAGCGCCUGGucCAGGAUUg -3' miRNA: 3'- cGGGCgCGCUUGCGGGUCc-GUCUUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 12732 | 0.68 | 0.388221 |
Target: 5'- cGCCC-CGCGucACaCCCAGGCugcGAGCa -3' miRNA: 3'- -CGGGcGCGCu-UGcGGGUCCGu--CUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 31012 | 0.69 | 0.379613 |
Target: 5'- uGUCCGgGUGcguCGuCCgCAGGCAGGACa -3' miRNA: 3'- -CGGGCgCGCuu-GC-GG-GUCCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 43490 | 0.69 | 0.362786 |
Target: 5'- aUCUGUguggugGCGggUGCCCAGGCGacGGACUu -3' miRNA: 3'- cGGGCG------CGCuuGCGGGUCCGU--CUUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 20331 | 0.69 | 0.362786 |
Target: 5'- uGUUCGcCGCGAAgGCacuggCCGGGUAGGACUc -3' miRNA: 3'- -CGGGC-GCGCUUgCG-----GGUCCGUCUUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 13141 | 0.7 | 0.323027 |
Target: 5'- -gCCGCGCcuccGAuaaGCCCaaGGGCAGAGCg -3' miRNA: 3'- cgGGCGCG----CUug-CGGG--UCCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 55403 | 0.7 | 0.323027 |
Target: 5'- aGUCgGCGCGcuCGCCgCAGGCGGccugGGCUu -3' miRNA: 3'- -CGGgCGCGCuuGCGG-GUCCGUC----UUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 44661 | 0.71 | 0.279727 |
Target: 5'- aCCCGCGCucGGugGCCCGGuccuuGCAGAGg- -3' miRNA: 3'- cGGGCGCG--CUugCGGGUC-----CGUCUUga -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 59089 | 0.71 | 0.279727 |
Target: 5'- cUUCGUGguugucaacaCGAGCGCCCAGGCAGuuACUg -3' miRNA: 3'- cGGGCGC----------GCUUGCGGGUCCGUCu-UGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 17889 | 0.72 | 0.235193 |
Target: 5'- cGCCCGCuauGUGGGCGUCUAcGGCgAGGACg -3' miRNA: 3'- -CGGGCG---CGCUUGCGGGU-CCG-UCUUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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