miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31747 5' -59.5 NC_006938.1 + 30832 0.66 0.510783
Target:  5'- -aUCGUGCccuuGAugGCCaCGcGGCAGAGCUg -3'
miRNA:   3'- cgGGCGCG----CUugCGG-GU-CCGUCUUGA- -5'
31747 5' -59.5 NC_006938.1 + 31012 0.69 0.379613
Target:  5'- uGUCCGgGUGcguCGuCCgCAGGCAGGACa -3'
miRNA:   3'- -CGGGCgCGCuu-GC-GG-GUCCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 31364 0.67 0.471144
Target:  5'- cCCUGgGCcacGggUGCCguGGUAGAGCa -3'
miRNA:   3'- cGGGCgCG---CuuGCGGguCCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 33442 1.08 0.000528
Target:  5'- uGCCCGCGCGAACGCCCAGGCAGAACUc -3'
miRNA:   3'- -CGGGCGCGCUUGCGGGUCCGUCUUGA- -5'
31747 5' -59.5 NC_006938.1 + 33946 0.68 0.414799
Target:  5'- uGCCagcggGCGCGggUGCaggccggacaguCCAGGuCGGAGCa -3'
miRNA:   3'- -CGGg----CGCGCuuGCG------------GGUCC-GUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 36497 0.72 0.218003
Target:  5'- -aCCGCGUGggUGCgCCucGCAGAACUc -3'
miRNA:   3'- cgGGCGCGCuuGCG-GGucCGUCUUGA- -5'
31747 5' -59.5 NC_006938.1 + 38993 0.66 0.510783
Target:  5'- aGCCgcgaGCGCGcAugGCCuCuGGCAGcGCg -3'
miRNA:   3'- -CGGg---CGCGC-UugCGG-GuCCGUCuUGa -5'
31747 5' -59.5 NC_006938.1 + 39924 0.68 0.396955
Target:  5'- gGCUCGUgggGCGGggccACGCUCAguGGCGGAGCg -3'
miRNA:   3'- -CGGGCG---CGCU----UGCGGGU--CCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 42746 0.67 0.490778
Target:  5'- uGCCCGCGCGGcgGCGguagaUCAGGCAc---- -3'
miRNA:   3'- -CGGGCGCGCU--UGCg----GGUCCGUcuuga -5'
31747 5' -59.5 NC_006938.1 + 43490 0.69 0.362786
Target:  5'- aUCUGUguggugGCGggUGCCCAGGCGacGGACUu -3'
miRNA:   3'- cGGGCG------CGCuuGCGGGUCCGU--CUUGA- -5'
31747 5' -59.5 NC_006938.1 + 44661 0.71 0.279727
Target:  5'- aCCCGCGCucGGugGCCCGGuccuuGCAGAGg- -3'
miRNA:   3'- cGGGCGCG--CUugCGGGUC-----CGUCUUga -5'
31747 5' -59.5 NC_006938.1 + 46060 0.68 0.423904
Target:  5'- aCCCagGUGaaucuGGugGCCCAGGCAGAcgGCa -3'
miRNA:   3'- cGGG--CGCg----CUugCGGGUCCGUCU--UGa -5'
31747 5' -59.5 NC_006938.1 + 47051 0.66 0.510783
Target:  5'- -aUCGUGCGAcagACGUCCAuGGCGGuGCg -3'
miRNA:   3'- cgGGCGCGCU---UGCGGGU-CCGUCuUGa -5'
31747 5' -59.5 NC_006938.1 + 50017 0.66 0.541399
Target:  5'- cGCCCGUGUGggUGgCCccGCcucuGGAACg -3'
miRNA:   3'- -CGGGCGCGCuuGCgGGucCG----UCUUGa -5'
31747 5' -59.5 NC_006938.1 + 50178 0.67 0.471144
Target:  5'- --aCGCGCGcuCGgagaCCAGGUAGAACa -3'
miRNA:   3'- cggGCGCGCuuGCg---GGUCCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 50689 0.68 0.388221
Target:  5'- cCCCG-GCGAGCGCCUGGucCAGGAUUg -3'
miRNA:   3'- cGGGCgCGCUUGCGGGUCc-GUCUUGA- -5'
31747 5' -59.5 NC_006938.1 + 50698 0.72 0.22361
Target:  5'- uGUCCgGUGCGAGCGCCCAagaGGCAcaGGCUg -3'
miRNA:   3'- -CGGG-CGCGCUUGCGGGU---CCGUc-UUGA- -5'
31747 5' -59.5 NC_006938.1 + 51559 0.68 0.396955
Target:  5'- cGCCaucgaggGCGCGGuccggguUGUCCAGGCAGGugUc -3'
miRNA:   3'- -CGGg------CGCGCUu------GCGGGUCCGUCUugA- -5'
31747 5' -59.5 NC_006938.1 + 55403 0.7 0.323027
Target:  5'- aGUCgGCGCGcuCGCCgCAGGCGGccugGGCUu -3'
miRNA:   3'- -CGGgCGCGCuuGCGG-GUCCGUC----UUGA- -5'
31747 5' -59.5 NC_006938.1 + 56509 0.72 0.218003
Target:  5'- aGCCgGgGCG-ACGCCCAGGCuggcGGAAg- -3'
miRNA:   3'- -CGGgCgCGCuUGCGGGUCCG----UCUUga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.