Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31747 | 5' | -59.5 | NC_006938.1 | + | 1279 | 0.73 | 0.207149 |
Target: 5'- aCCUGCGCGucgaaGCCCAGgaGCAGGGCa -3' miRNA: 3'- cGGGCGCGCuug--CGGGUC--CGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 1339 | 0.67 | 0.471144 |
Target: 5'- uUCCGUGgGAACuuGCCaauGGGCGGGGCg -3' miRNA: 3'- cGGGCGCgCUUG--CGGg--UCCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 6299 | 0.67 | 0.490778 |
Target: 5'- uGCCUGCGCGAGCGgCUcgaGGGCc----- -3' miRNA: 3'- -CGGGCGCGCUUGCgGG---UCCGucuuga -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 7125 | 0.67 | 0.480912 |
Target: 5'- uGUCCGCGuCGAGgaGCCCAaGGUcgucGAACUg -3' miRNA: 3'- -CGGGCGC-GCUUg-CGGGU-CCGu---CUUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 9872 | 0.67 | 0.480912 |
Target: 5'- gGCCUcCGuCGAGCugGCCCAGGagaAGGGCg -3' miRNA: 3'- -CGGGcGC-GCUUG--CGGGUCCg--UCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 12732 | 0.68 | 0.388221 |
Target: 5'- cGCCC-CGCGucACaCCCAGGCugcGAGCa -3' miRNA: 3'- -CGGGcGCGCu-UGcGGGUCCGu--CUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 12773 | 0.67 | 0.490778 |
Target: 5'- -aCCGCuGgGAGCuGCuCCAGGaCGGAGCg -3' miRNA: 3'- cgGGCG-CgCUUG-CG-GGUCC-GUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 13141 | 0.7 | 0.323027 |
Target: 5'- -gCCGCGCcuccGAuaaGCCCaaGGGCAGAGCg -3' miRNA: 3'- cgGGCGCG----CUug-CGGG--UCCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 13513 | 0.66 | 0.551743 |
Target: 5'- aCCCGCGcCGGGCacaaagGCCUcucgcguuccagAGGCGGGGCc -3' miRNA: 3'- cGGGCGC-GCUUG------CGGG------------UCCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 14261 | 0.67 | 0.472116 |
Target: 5'- cGUCUgGCGCacucacaagguccacAACGCCgGGGCAGAGCg -3' miRNA: 3'- -CGGG-CGCGc--------------UUGCGGgUCCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 16574 | 0.66 | 0.498737 |
Target: 5'- aCCCGUGUGGcgcacggugacgcGCGCCCAcucgucggcggucGGCGGAGu- -3' miRNA: 3'- cGGGCGCGCU-------------UGCGGGU-------------CCGUCUUga -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 17889 | 0.72 | 0.235193 |
Target: 5'- cGCCCGCuauGUGGGCGUCUAcGGCgAGGACg -3' miRNA: 3'- -CGGGCG---CGCUUGCGGGU-CCG-UCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 20331 | 0.69 | 0.362786 |
Target: 5'- uGUUCGcCGCGAAgGCacuggCCGGGUAGGACUc -3' miRNA: 3'- -CGGGC-GCGCUUgCG-----GGUCCGUCUUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 20439 | 0.66 | 0.548633 |
Target: 5'- uGCCuggCGgGCGGACGCugCCAGGUgcugaucaaggugaAGAACg -3' miRNA: 3'- -CGG---GCgCGCUUGCG--GGUCCG--------------UCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 22380 | 0.66 | 0.545529 |
Target: 5'- gGgCCGCGCGAcuggugcagaaccccGCGaCCCAGaGCGaGACg -3' miRNA: 3'- -CgGGCGCGCU---------------UGC-GGGUC-CGUcUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 27103 | 0.66 | 0.498737 |
Target: 5'- cGCCCuuGCGAaacagccGCGCCCuGGUcuuuccaAGGACg -3' miRNA: 3'- -CGGGcgCGCU-------UGCGGGuCCG-------UCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 27348 | 0.68 | 0.433127 |
Target: 5'- gGUCCGCGagacCGAguACaCCCAGGCAGAc-- -3' miRNA: 3'- -CGGGCGC----GCU--UGcGGGUCCGUCUuga -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 27993 | 0.67 | 0.442465 |
Target: 5'- -gUCGCGCGGucgucGCGCCCuuggcaAGGCGGcGCUu -3' miRNA: 3'- cgGGCGCGCU-----UGCGGG------UCCGUCuUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 28668 | 0.67 | 0.477971 |
Target: 5'- gGCCgGgGCGAACGUguugucgacgaaguCCAGGUuGGGCg -3' miRNA: 3'- -CGGgCgCGCUUGCG--------------GGUCCGuCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 30124 | 0.67 | 0.441526 |
Target: 5'- uGCCUGgGCGuuCGCgCGGGCAGuuggaccAGCUg -3' miRNA: 3'- -CGGGCgCGCuuGCGgGUCCGUC-------UUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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