Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31747 | 5' | -59.5 | NC_006938.1 | + | 50698 | 0.72 | 0.22361 |
Target: 5'- uGUCCgGUGCGAGCGCCCAagaGGCAcaGGCUg -3' miRNA: 3'- -CGGG-CGCGCUUGCGGGU---CCGUc-UUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 20439 | 0.66 | 0.548633 |
Target: 5'- uGCCuggCGgGCGGACGCugCCAGGUgcugaucaaggugaAGAACg -3' miRNA: 3'- -CGG---GCgCGCUUGCG--GGUCCG--------------UCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 22380 | 0.66 | 0.545529 |
Target: 5'- gGgCCGCGCGAcuggugcagaaccccGCGaCCCAGaGCGaGACg -3' miRNA: 3'- -CgGGCGCGCU---------------UGC-GGGUC-CGUcUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 50017 | 0.66 | 0.541399 |
Target: 5'- cGCCCGUGUGggUGgCCccGCcucuGGAACg -3' miRNA: 3'- -CGGGCGCGCuuGCgGGucCG----UCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 58582 | 0.67 | 0.490778 |
Target: 5'- cGCUCGUG-GAugGCCUGGGCAcugucccccuGGGCg -3' miRNA: 3'- -CGGGCGCgCUugCGGGUCCGU----------CUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 9872 | 0.67 | 0.480912 |
Target: 5'- gGCCUcCGuCGAGCugGCCCAGGagaAGGGCg -3' miRNA: 3'- -CGGGcGC-GCUUG--CGGGUCCg--UCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 14261 | 0.67 | 0.472116 |
Target: 5'- cGUCUgGCGCacucacaagguccacAACGCCgGGGCAGAGCg -3' miRNA: 3'- -CGGG-CGCGc--------------UUGCGGgUCCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 30124 | 0.67 | 0.441526 |
Target: 5'- uGCCUGgGCGuuCGCgCGGGCAGuuggaccAGCUg -3' miRNA: 3'- -CGGGCgCGCuuGCGgGUCCGUC-------UUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 63470 | 0.68 | 0.433127 |
Target: 5'- cGCUCGCGagcuGAACGUCCccaucgagugGGGCGGuGACUg -3' miRNA: 3'- -CGGGCGCg---CUUGCGGG----------UCCGUC-UUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 27348 | 0.68 | 0.433127 |
Target: 5'- gGUCCGCGagacCGAguACaCCCAGGCAGAc-- -3' miRNA: 3'- -CGGGCGC----GCU--UGcGGGUCCGUCUuga -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 17889 | 0.72 | 0.235193 |
Target: 5'- cGCCCGCuauGUGGGCGUCUAcGGCgAGGACg -3' miRNA: 3'- -CGGGCG---CGCUUGCGGGU-CCG-UCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 59089 | 0.71 | 0.279727 |
Target: 5'- cUUCGUGguugucaacaCGAGCGCCCAGGCAGuuACUg -3' miRNA: 3'- cGGGCGC----------GCUUGCGGGUCCGUCu-UGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 55403 | 0.7 | 0.323027 |
Target: 5'- aGUCgGCGCGcuCGCCgCAGGCGGccugGGCUu -3' miRNA: 3'- -CGGgCGCGCuuGCGG-GUCCGUC----UUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 43490 | 0.69 | 0.362786 |
Target: 5'- aUCUGUguggugGCGggUGCCCAGGCGacGGACUu -3' miRNA: 3'- cGGGCG------CGCuuGCGGGUCCGU--CUUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 39924 | 0.68 | 0.396955 |
Target: 5'- gGCUCGUgggGCGGggccACGCUCAguGGCGGAGCg -3' miRNA: 3'- -CGGGCG---CGCU----UGCGGGU--CCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 51559 | 0.68 | 0.396955 |
Target: 5'- cGCCaucgaggGCGCGGuccggguUGUCCAGGCAGGugUc -3' miRNA: 3'- -CGGg------CGCGCUu------GCGGGUCCGUCUugA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 46060 | 0.68 | 0.423904 |
Target: 5'- aCCCagGUGaaucuGGugGCCCAGGCAGAcgGCa -3' miRNA: 3'- cGGG--CGCg----CUugCGGGUCCGUCU--UGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 33442 | 1.08 | 0.000528 |
Target: 5'- uGCCCGCGCGAACGCCCAGGCAGAACUc -3' miRNA: 3'- -CGGGCGCGCUUGCGGGUCCGUCUUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 47051 | 0.66 | 0.510783 |
Target: 5'- -aUCGUGCGAcagACGUCCAuGGCGGuGCg -3' miRNA: 3'- cgGGCGCGCU---UGCGGGU-CCGUCuUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 38993 | 0.66 | 0.510783 |
Target: 5'- aGCCgcgaGCGCGcAugGCCuCuGGCAGcGCg -3' miRNA: 3'- -CGGg---CGCGC-UugCGG-GuCCGUCuUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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