miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31747 5' -59.5 NC_006938.1 + 60857 0.66 0.510783
Target:  5'- aCCCuuGUuuacacGAGCGCCC-GGCGGGACa -3'
miRNA:   3'- cGGGcgCG------CUUGCGGGuCCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 33946 0.68 0.414799
Target:  5'- uGCCagcggGCGCGggUGCaggccggacaguCCAGGuCGGAGCa -3'
miRNA:   3'- -CGGg----CGCGCuuGCG------------GGUCC-GUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 12732 0.68 0.388221
Target:  5'- cGCCC-CGCGucACaCCCAGGCugcGAGCa -3'
miRNA:   3'- -CGGGcGCGCu-UGcGGGUCCGu--CUUGa -5'
31747 5' -59.5 NC_006938.1 + 33442 1.08 0.000528
Target:  5'- uGCCCGCGCGAACGCCCAGGCAGAACUc -3'
miRNA:   3'- -CGGGCGCGCUUGCGGGUCCGUCUUGA- -5'
31747 5' -59.5 NC_006938.1 + 6299 0.67 0.490778
Target:  5'- uGCCUGCGCGAGCGgCUcgaGGGCc----- -3'
miRNA:   3'- -CGGGCGCGCUUGCgGG---UCCGucuuga -5'
31747 5' -59.5 NC_006938.1 + 12773 0.67 0.490778
Target:  5'- -aCCGCuGgGAGCuGCuCCAGGaCGGAGCg -3'
miRNA:   3'- cgGGCG-CgCUUG-CG-GGUCC-GUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 13513 0.66 0.551743
Target:  5'- aCCCGCGcCGGGCacaaagGCCUcucgcguuccagAGGCGGGGCc -3'
miRNA:   3'- cGGGCGC-GCUUG------CGGG------------UCCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 47051 0.66 0.510783
Target:  5'- -aUCGUGCGAcagACGUCCAuGGCGGuGCg -3'
miRNA:   3'- cgGGCGCGCU---UGCGGGU-CCGUCuUGa -5'
31747 5' -59.5 NC_006938.1 + 38993 0.66 0.510783
Target:  5'- aGCCgcgaGCGCGcAugGCCuCuGGCAGcGCg -3'
miRNA:   3'- -CGGg---CGCGC-UugCGG-GuCCGUCuUGa -5'
31747 5' -59.5 NC_006938.1 + 27993 0.67 0.442465
Target:  5'- -gUCGCGCGGucgucGCGCCCuuggcaAGGCGGcGCUu -3'
miRNA:   3'- cgGGCGCGCU-----UGCGGG------UCCGUCuUGA- -5'
31747 5' -59.5 NC_006938.1 + 50178 0.67 0.471144
Target:  5'- --aCGCGCGcuCGgagaCCAGGUAGAACa -3'
miRNA:   3'- cggGCGCGCuuGCg---GGUCCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 31364 0.67 0.471144
Target:  5'- cCCUGgGCcacGggUGCCguGGUAGAGCa -3'
miRNA:   3'- cGGGCgCG---CuuGCGGguCCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 27103 0.66 0.498737
Target:  5'- cGCCCuuGCGAaacagccGCGCCCuGGUcuuuccaAGGACg -3'
miRNA:   3'- -CGGGcgCGCU-------UGCGGGuCCG-------UCUUGa -5'
31747 5' -59.5 NC_006938.1 + 1339 0.67 0.471144
Target:  5'- uUCCGUGgGAACuuGCCaauGGGCGGGGCg -3'
miRNA:   3'- cGGGCGCgCUUG--CGGg--UCCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 16574 0.66 0.498737
Target:  5'- aCCCGUGUGGcgcacggugacgcGCGCCCAcucgucggcggucGGCGGAGu- -3'
miRNA:   3'- cGGGCGCGCU-------------UGCGGGU-------------CCGUCUUga -5'
31747 5' -59.5 NC_006938.1 + 28668 0.67 0.477971
Target:  5'- gGCCgGgGCGAACGUguugucgacgaaguCCAGGUuGGGCg -3'
miRNA:   3'- -CGGgCgCGCUUGCG--------------GGUCCGuCUUGa -5'
31747 5' -59.5 NC_006938.1 + 59230 0.67 0.451917
Target:  5'- aGCUCG-GCGAGCGCggucuCCAGGCGcGggUUc -3'
miRNA:   3'- -CGGGCgCGCUUGCG-----GGUCCGU-CuuGA- -5'
31747 5' -59.5 NC_006938.1 + 50689 0.68 0.388221
Target:  5'- cCCCG-GCGAGCGCCUGGucCAGGAUUg -3'
miRNA:   3'- cGGGCgCGCUUGCGGGUCc-GUCUUGA- -5'
31747 5' -59.5 NC_006938.1 + 42746 0.67 0.490778
Target:  5'- uGCCCGCGCGGcgGCGguagaUCAGGCAc---- -3'
miRNA:   3'- -CGGGCGCGCU--UGCg----GGUCCGUcuuga -5'
31747 5' -59.5 NC_006938.1 + 7125 0.67 0.480912
Target:  5'- uGUCCGCGuCGAGgaGCCCAaGGUcgucGAACUg -3'
miRNA:   3'- -CGGGCGC-GCUUg-CGGGU-CCGu---CUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.