miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31747 5' -59.5 NC_006938.1 + 33442 1.08 0.000528
Target:  5'- uGCCCGCGCGAACGCCCAGGCAGAACUc -3'
miRNA:   3'- -CGGGCGCGCUUGCGGGUCCGUCUUGA- -5'
31747 5' -59.5 NC_006938.1 + 1279 0.73 0.207149
Target:  5'- aCCUGCGCGucgaaGCCCAGgaGCAGGGCa -3'
miRNA:   3'- cGGGCGCGCuug--CGGGUC--CGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 56509 0.72 0.218003
Target:  5'- aGCCgGgGCG-ACGCCCAGGCuggcGGAAg- -3'
miRNA:   3'- -CGGgCgCGCuUGCGGGUCCG----UCUUga -5'
31747 5' -59.5 NC_006938.1 + 36497 0.72 0.218003
Target:  5'- -aCCGCGUGggUGCgCCucGCAGAACUc -3'
miRNA:   3'- cgGGCGCGCuuGCG-GGucCGUCUUGA- -5'
31747 5' -59.5 NC_006938.1 + 50698 0.72 0.22361
Target:  5'- uGUCCgGUGCGAGCGCCCAagaGGCAcaGGCUg -3'
miRNA:   3'- -CGGG-CGCGCUUGCGGGU---CCGUc-UUGA- -5'
31747 5' -59.5 NC_006938.1 + 17889 0.72 0.235193
Target:  5'- cGCCCGCuauGUGGGCGUCUAcGGCgAGGACg -3'
miRNA:   3'- -CGGGCG---CGCUUGCGGGU-CCG-UCUUGa -5'
31747 5' -59.5 NC_006938.1 + 44661 0.71 0.279727
Target:  5'- aCCCGCGCucGGugGCCCGGuccuuGCAGAGg- -3'
miRNA:   3'- cGGGCGCG--CUugCGGGUC-----CGUCUUga -5'
31747 5' -59.5 NC_006938.1 + 59089 0.71 0.279727
Target:  5'- cUUCGUGguugucaacaCGAGCGCCCAGGCAGuuACUg -3'
miRNA:   3'- cGGGCGC----------GCUUGCGGGUCCGUCu-UGA- -5'
31747 5' -59.5 NC_006938.1 + 55403 0.7 0.323027
Target:  5'- aGUCgGCGCGcuCGCCgCAGGCGGccugGGCUu -3'
miRNA:   3'- -CGGgCGCGCuuGCGG-GUCCGUC----UUGA- -5'
31747 5' -59.5 NC_006938.1 + 13141 0.7 0.323027
Target:  5'- -gCCGCGCcuccGAuaaGCCCaaGGGCAGAGCg -3'
miRNA:   3'- cgGGCGCG----CUug-CGGG--UCCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 20331 0.69 0.362786
Target:  5'- uGUUCGcCGCGAAgGCacuggCCGGGUAGGACUc -3'
miRNA:   3'- -CGGGC-GCGCUUgCG-----GGUCCGUCUUGA- -5'
31747 5' -59.5 NC_006938.1 + 43490 0.69 0.362786
Target:  5'- aUCUGUguggugGCGggUGCCCAGGCGacGGACUu -3'
miRNA:   3'- cGGGCG------CGCuuGCGGGUCCGU--CUUGA- -5'
31747 5' -59.5 NC_006938.1 + 31012 0.69 0.379613
Target:  5'- uGUCCGgGUGcguCGuCCgCAGGCAGGACa -3'
miRNA:   3'- -CGGGCgCGCuu-GC-GG-GUCCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 12732 0.68 0.388221
Target:  5'- cGCCC-CGCGucACaCCCAGGCugcGAGCa -3'
miRNA:   3'- -CGGGcGCGCu-UGcGGGUCCGu--CUUGa -5'
31747 5' -59.5 NC_006938.1 + 50689 0.68 0.388221
Target:  5'- cCCCG-GCGAGCGCCUGGucCAGGAUUg -3'
miRNA:   3'- cGGGCgCGCUUGCGGGUCc-GUCUUGA- -5'
31747 5' -59.5 NC_006938.1 + 39924 0.68 0.396955
Target:  5'- gGCUCGUgggGCGGggccACGCUCAguGGCGGAGCg -3'
miRNA:   3'- -CGGGCG---CGCU----UGCGGGU--CCGUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 51559 0.68 0.396955
Target:  5'- cGCCaucgaggGCGCGGuccggguUGUCCAGGCAGGugUc -3'
miRNA:   3'- -CGGg------CGCGCUu------GCGGGUCCGUCUugA- -5'
31747 5' -59.5 NC_006938.1 + 33946 0.68 0.414799
Target:  5'- uGCCagcggGCGCGggUGCaggccggacaguCCAGGuCGGAGCa -3'
miRNA:   3'- -CGGg----CGCGCuuGCG------------GGUCC-GUCUUGa -5'
31747 5' -59.5 NC_006938.1 + 46060 0.68 0.423904
Target:  5'- aCCCagGUGaaucuGGugGCCCAGGCAGAcgGCa -3'
miRNA:   3'- cGGG--CGCg----CUugCGGGUCCGUCU--UGa -5'
31747 5' -59.5 NC_006938.1 + 63470 0.68 0.433127
Target:  5'- cGCUCGCGagcuGAACGUCCccaucgagugGGGCGGuGACUg -3'
miRNA:   3'- -CGGGCGCg---CUUGCGGG----------UCCGUC-UUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.