Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31753 | 5' | -58.1 | NC_006938.1 | + | 11199 | 0.69 | 0.434169 |
Target: 5'- cCUCGGCUgAcCCGUgCCACGGgccgguuguugaucgAGAGCa -3' miRNA: 3'- aGAGCCGGgU-GGUAgGGUGCC---------------UCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 43869 | 0.68 | 0.478469 |
Target: 5'- ---gGGUCCugCAgaaCCCuCGGAGGACa -3' miRNA: 3'- agagCCGGGugGUa--GGGuGCCUCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 35052 | 0.67 | 0.518722 |
Target: 5'- gUCUUGGCCgAgCGgcgcuUgCCACGGAGGAg -3' miRNA: 3'- -AGAGCCGGgUgGU-----AgGGUGCCUCUUg -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 20143 | 0.67 | 0.518722 |
Target: 5'- -----cCCCGCC-UCCCACGGGGAGg -3' miRNA: 3'- agagccGGGUGGuAGGGUGCCUCUUg -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 23081 | 0.67 | 0.539349 |
Target: 5'- gUUCGGCUgGCCcuggucGUCCguCGGAGGAg -3' miRNA: 3'- aGAGCCGGgUGG------UAGGguGCCUCUUg -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 32560 | 0.67 | 0.557098 |
Target: 5'- uUCUCGGCUCuCCAUCCUGCaacuucgucauguuGGAcugauGGACg -3' miRNA: 3'- -AGAGCCGGGuGGUAGGGUG--------------CCU-----CUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 3430 | 0.66 | 0.570782 |
Target: 5'- --cCGcGCCCACCuGUCUaGCGGAGAucACa -3' miRNA: 3'- agaGC-CGGGUGG-UAGGgUGCCUCU--UG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 53247 | 0.66 | 0.591986 |
Target: 5'- cCUUGGCaCCGCCcUCCCaggcGCGGAa--- -3' miRNA: 3'- aGAGCCG-GGUGGuAGGG----UGCCUcuug -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 30577 | 1.1 | 0.000538 |
Target: 5'- cUCUCGGCCCACCAUCCCACGGAGAACg -3' miRNA: 3'- -AGAGCCGGGUGGUAGGGUGCCUCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 29225 | 0.79 | 0.101693 |
Target: 5'- gCUCGGCgUgACCAucucUCCCugGGAGAACg -3' miRNA: 3'- aGAGCCG-GgUGGU----AGGGugCCUCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 54155 | 0.73 | 0.244254 |
Target: 5'- gCUCGGCCCA--GUCCCACGuGGAccGCa -3' miRNA: 3'- aGAGCCGGGUggUAGGGUGCcUCU--UG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 30500 | 0.69 | 0.41202 |
Target: 5'- aCUCGG-CCACCcuguacagGUCgCCACGGAcgGAGCu -3' miRNA: 3'- aGAGCCgGGUGG--------UAG-GGUGCCU--CUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 5947 | 0.7 | 0.38534 |
Target: 5'- --gCGGUCCGCuCGUUCCagGCGGAGAAg -3' miRNA: 3'- agaGCCGGGUG-GUAGGG--UGCCUCUUg -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 56401 | 0.74 | 0.220646 |
Target: 5'- gCUCGGCCauuCGCCGUCUCcaGCGG-GAGCg -3' miRNA: 3'- aGAGCCGG---GUGGUAGGG--UGCCuCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 12643 | 0.68 | 0.458925 |
Target: 5'- gUCUCGGUCCaggcccucgGCCGcCUCGCGGAaGGCg -3' miRNA: 3'- -AGAGCCGGG---------UGGUaGGGUGCCUcUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 22955 | 0.72 | 0.27667 |
Target: 5'- --cCGGUCCGCCAgCUC-CGGGGAGCg -3' miRNA: 3'- agaGCCGGGUGGUaGGGuGCCUCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 40940 | 0.68 | 0.478469 |
Target: 5'- gCUCGGCUCGacCCGcCCCGCGauGGGAAUg -3' miRNA: 3'- aGAGCCGGGU--GGUaGGGUGC--CUCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 54296 | 0.66 | 0.591986 |
Target: 5'- -aUCGGCaagCGCCGUUCCAacggUGGAGAcgACa -3' miRNA: 3'- agAGCCGg--GUGGUAGGGU----GCCUCU--UG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 39395 | 0.71 | 0.31243 |
Target: 5'- cUCUCGGgcucCCCGCUcucuUCUCaACGGAGGACa -3' miRNA: 3'- -AGAGCC----GGGUGGu---AGGG-UGCCUCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 4254 | 0.66 | 0.590922 |
Target: 5'- --aCGGCCggauaccUGCCGUUCCA-GGAGGACg -3' miRNA: 3'- agaGCCGG-------GUGGUAGGGUgCCUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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