Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31763 | 3' | -56.7 | NC_006938.1 | + | 22531 | 1.11 | 0.0006 |
Target: 5'- cGAGACGCGAACAGCGACGCCUGGAGCu -3' miRNA: 3'- -CUCUGCGCUUGUCGCUGCGGACCUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 61736 | 0.81 | 0.091552 |
Target: 5'- uGGACGgGGACGGCGACuaCCUGGAGUu -3' miRNA: 3'- cUCUGCgCUUGUCGCUGc-GGACCUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 51906 | 0.75 | 0.212095 |
Target: 5'- cAGugGCGcuGCAGCaGACGCuCUGGGGUc -3' miRNA: 3'- cUCugCGCu-UGUCG-CUGCG-GACCUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 4279 | 0.73 | 0.301926 |
Target: 5'- aGGACGUGAACGGaGA-GCCggUGGAGCg -3' miRNA: 3'- cUCUGCGCUUGUCgCUgCGG--ACCUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 25563 | 0.71 | 0.382425 |
Target: 5'- aGGGCGUGAAC-GUGucuCGCCUGG-GCu -3' miRNA: 3'- cUCUGCGCUUGuCGCu--GCGGACCuCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 25671 | 0.71 | 0.406476 |
Target: 5'- uGAGACGCGGGCcaccAGUgugGGCGCuucuccuggaucucCUGGAGCc -3' miRNA: 3'- -CUCUGCGCUUG----UCG---CUGCG--------------GACCUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 19939 | 0.7 | 0.427698 |
Target: 5'- -cGGCGUGGAggacucCAGgGAgGCCUGGAGg -3' miRNA: 3'- cuCUGCGCUU------GUCgCUgCGGACCUCg -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 13399 | 0.7 | 0.437127 |
Target: 5'- cGAGcGCGCGuucauACAG-GACGCCaccgaGGAGCa -3' miRNA: 3'- -CUC-UGCGCu----UGUCgCUGCGGa----CCUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 30771 | 0.7 | 0.445714 |
Target: 5'- cAGACGCGAucaaggaGCAGgccCGACGCgUGG-GCu -3' miRNA: 3'- cUCUGCGCU-------UGUC---GCUGCGgACCuCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 42423 | 0.7 | 0.446674 |
Target: 5'- -cGACGCGGccGgAGCGACGCCUGc--- -3' miRNA: 3'- cuCUGCGCU--UgUCGCUGCGGACcucg -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 40112 | 0.7 | 0.446674 |
Target: 5'- -cGACGCGGACAGCGccggucaGCCgGGuGUc -3' miRNA: 3'- cuCUGCGCUUGUCGCug-----CGGaCCuCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 23643 | 0.7 | 0.450525 |
Target: 5'- aAGACGCGGACGGUGGCGC--GGucuaccucgugccgaAGCa -3' miRNA: 3'- cUCUGCGCUUGUCGCUGCGgaCC---------------UCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 50675 | 0.7 | 0.456336 |
Target: 5'- gGAGGCGgGAGaggcccCGGCGAgCGCCUGGuccaggauuGGCc -3' miRNA: 3'- -CUCUGCgCUU------GUCGCU-GCGGACC---------UCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 12748 | 0.69 | 0.485975 |
Target: 5'- cAGGCuGCGAGCAaugacgucuGCGAcCGCUgGGAGCu -3' miRNA: 3'- cUCUG-CGCUUGU---------CGCU-GCGGaCCUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 50762 | 0.69 | 0.505212 |
Target: 5'- cGGGGCacuGC--GCGGCGACGagcuccgcuccguCCUGGAGCa -3' miRNA: 3'- -CUCUG---CGcuUGUCGCUGC-------------GGACCUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 26394 | 0.69 | 0.506234 |
Target: 5'- --cAUGgGAGCGGCGGCGCUagUGGcGCg -3' miRNA: 3'- cucUGCgCUUGUCGCUGCGG--ACCuCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 58888 | 0.68 | 0.526845 |
Target: 5'- aGAGACGaCGAuCAaCGACGCCaacgGuGAGCu -3' miRNA: 3'- -CUCUGC-GCUuGUcGCUGCGGa---C-CUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 22926 | 0.68 | 0.526845 |
Target: 5'- uGGACcaGCGGauGCGGaCGAUGCCcaagUGGGGCa -3' miRNA: 3'- cUCUG--CGCU--UGUC-GCUGCGG----ACCUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 7192 | 0.68 | 0.526845 |
Target: 5'- aGAGAgCGCGuccgcguuGACcaGGCGcaGgGCCUGGAGCu -3' miRNA: 3'- -CUCU-GCGC--------UUG--UCGC--UgCGGACCUCG- -5' |
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31763 | 3' | -56.7 | NC_006938.1 | + | 21034 | 0.68 | 0.526845 |
Target: 5'- cAGugGUcgGGGCGGUGGCGUCgaUGGAGUu -3' miRNA: 3'- cUCugCG--CUUGUCGCUGCGG--ACCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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