miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31763 3' -56.7 NC_006938.1 + 29867 0.67 0.633379
Target:  5'- uGGACGCG-GCuGUGAUGgCCgagcGGAGCc -3'
miRNA:   3'- cUCUGCGCuUGuCGCUGC-GGa---CCUCG- -5'
31763 3' -56.7 NC_006938.1 + 22926 0.68 0.526845
Target:  5'- uGGACcaGCGGauGCGGaCGAUGCCcaagUGGGGCa -3'
miRNA:   3'- cUCUG--CGCU--UGUC-GCUGCGG----ACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 58888 0.68 0.526845
Target:  5'- aGAGACGaCGAuCAaCGACGCCaacgGuGAGCu -3'
miRNA:   3'- -CUCUGC-GCUuGUcGCUGCGGa---C-CUCG- -5'
31763 3' -56.7 NC_006938.1 + 60149 0.68 0.536223
Target:  5'- uGGGCGCgGGGCAGaCGAccauuguCGCC-GGAGCc -3'
miRNA:   3'- cUCUGCG-CUUGUC-GCU-------GCGGaCCUCG- -5'
31763 3' -56.7 NC_006938.1 + 8376 0.68 0.568934
Target:  5'- cGGACGC--GCAG-GACGCCggGGAGa -3'
miRNA:   3'- cUCUGCGcuUGUCgCUGCGGa-CCUCg -5'
31763 3' -56.7 NC_006938.1 + 25521 0.68 0.579597
Target:  5'- aGGGugGCuGGAaGGCacaccucauCGCCUGGGGCa -3'
miRNA:   3'- -CUCugCG-CUUgUCGcu-------GCGGACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 27576 0.67 0.61073
Target:  5'- uGAGACGaguGGACAcccacagcgccacGCGGCGCUggaacaacaGGAGCg -3'
miRNA:   3'- -CUCUGCg--CUUGU-------------CGCUGCGGa--------CCUCG- -5'
31763 3' -56.7 NC_006938.1 + 17554 0.67 0.611807
Target:  5'- -cGACaugaGAACGGCGACaaCCUGGAcGCg -3'
miRNA:   3'- cuCUGcg--CUUGUCGCUGc-GGACCU-CG- -5'
31763 3' -56.7 NC_006938.1 + 28206 0.67 0.611807
Target:  5'- cAGACGacgaGAGC-GCGGCGCggaucuggaUGGGGCa -3'
miRNA:   3'- cUCUGCg---CUUGuCGCUGCGg--------ACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 7192 0.68 0.526845
Target:  5'- aGAGAgCGCGuccgcguuGACcaGGCGcaGgGCCUGGAGCu -3'
miRNA:   3'- -CUCU-GCGC--------UUG--UCGC--UgCGGACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 50762 0.69 0.505212
Target:  5'- cGGGGCacuGC--GCGGCGACGagcuccgcuccguCCUGGAGCa -3'
miRNA:   3'- -CUCUG---CGcuUGUCGCUGC-------------GGACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 23643 0.7 0.450525
Target:  5'- aAGACGCGGACGGUGGCGC--GGucuaccucgugccgaAGCa -3'
miRNA:   3'- cUCUGCGCUUGUCGCUGCGgaCC---------------UCG- -5'
31763 3' -56.7 NC_006938.1 + 51906 0.75 0.212095
Target:  5'- cAGugGCGcuGCAGCaGACGCuCUGGGGUc -3'
miRNA:   3'- cUCugCGCu-UGUCG-CUGCG-GACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 4279 0.73 0.301926
Target:  5'- aGGACGUGAACGGaGA-GCCggUGGAGCg -3'
miRNA:   3'- cUCUGCGCUUGUCgCUgCGG--ACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 25563 0.71 0.382425
Target:  5'- aGGGCGUGAAC-GUGucuCGCCUGG-GCu -3'
miRNA:   3'- cUCUGCGCUUGuCGCu--GCGGACCuCG- -5'
31763 3' -56.7 NC_006938.1 + 19939 0.7 0.427698
Target:  5'- -cGGCGUGGAggacucCAGgGAgGCCUGGAGg -3'
miRNA:   3'- cuCUGCGCUU------GUCgCUgCGGACCUCg -5'
31763 3' -56.7 NC_006938.1 + 13399 0.7 0.437127
Target:  5'- cGAGcGCGCGuucauACAG-GACGCCaccgaGGAGCa -3'
miRNA:   3'- -CUC-UGCGCu----UGUCgCUGCGGa----CCUCG- -5'
31763 3' -56.7 NC_006938.1 + 30771 0.7 0.445714
Target:  5'- cAGACGCGAucaaggaGCAGgccCGACGCgUGG-GCu -3'
miRNA:   3'- cUCUGCGCU-------UGUC---GCUGCGgACCuCG- -5'
31763 3' -56.7 NC_006938.1 + 40112 0.7 0.446674
Target:  5'- -cGACGCGGACAGCGccggucaGCCgGGuGUc -3'
miRNA:   3'- cuCUGCGCUUGUCGCug-----CGGaCCuCG- -5'
31763 3' -56.7 NC_006938.1 + 42423 0.7 0.446674
Target:  5'- -cGACGCGGccGgAGCGACGCCUGc--- -3'
miRNA:   3'- cuCUGCGCU--UgUCGCUGCGGACcucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.