miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31766 5' -61.7 NC_006938.1 + 15212 1.09 0.000361
Target:  5'- aGGACGCGCUCGUCACCGCCGCCCGAGc -3'
miRNA:   3'- -CCUGCGCGAGCAGUGGCGGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 55406 0.75 0.12786
Target:  5'- cGGCGCGCUCGcCGCagGCgGCCUGGGc -3'
miRNA:   3'- cCUGCGCGAGCaGUGg-CGgCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 51942 0.74 0.153325
Target:  5'- cGGugG-GCUCGgCGgUGCCGCCCGAu -3'
miRNA:   3'- -CCugCgCGAGCaGUgGCGGCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 39858 0.74 0.153325
Target:  5'- aGGGCGCGCUCGagCAUCucggccauGCCGCCCu-- -3'
miRNA:   3'- -CCUGCGCGAGCa-GUGG--------CGGCGGGcuc -5'
31766 5' -61.7 NC_006938.1 + 12791 0.73 0.169869
Target:  5'- aGGACGgagcggaGCUCGUCGCCGCgcagUGCCCcGGa -3'
miRNA:   3'- -CCUGCg------CGAGCAGUGGCG----GCGGGcUC- -5'
31766 5' -61.7 NC_006938.1 + 30016 0.73 0.176923
Target:  5'- cGGACGCGguaucugguCUCGUCGCCGacguggucuucagCGUCCGAGu -3'
miRNA:   3'- -CCUGCGC---------GAGCAGUGGCg------------GCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 46881 0.72 0.197676
Target:  5'- gGGACGaGCUCcUCACacuguuccaGCCGCCUGGGa -3'
miRNA:   3'- -CCUGCgCGAGcAGUGg--------CGGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 51532 0.71 0.213018
Target:  5'- cGGCGCGUUCaUCgagaucgcaACCGCCGCCauCGAGg -3'
miRNA:   3'- cCUGCGCGAGcAG---------UGGCGGCGG--GCUC- -5'
31766 5' -61.7 NC_006938.1 + 51013 0.71 0.240855
Target:  5'- cGGCGCGUUCGaCGCUGCCa-CCGGGg -3'
miRNA:   3'- cCUGCGCGAGCaGUGGCGGcgGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 11622 0.7 0.252813
Target:  5'- cGGGCGgcacCGC-CGagccCACCGCCGCCUGAc -3'
miRNA:   3'- -CCUGC----GCGaGCa---GUGGCGGCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 46984 0.7 0.271661
Target:  5'- uGGGCGCGC--GUCACCGUgCGCCacaCGGGu -3'
miRNA:   3'- -CCUGCGCGagCAGUGGCG-GCGG---GCUC- -5'
31766 5' -61.7 NC_006938.1 + 30254 0.7 0.27819
Target:  5'- cGGCGCGCUUGUCGgCGCgUGUCCa-- -3'
miRNA:   3'- cCUGCGCGAGCAGUgGCG-GCGGGcuc -5'
31766 5' -61.7 NC_006938.1 + 41917 0.7 0.282834
Target:  5'- -cGCGCGCggcccacgucgcccUgGUCACCGCCGUCCa-- -3'
miRNA:   3'- ccUGCGCG--------------AgCAGUGGCGGCGGGcuc -5'
31766 5' -61.7 NC_006938.1 + 46702 0.7 0.284843
Target:  5'- aGGuCGCGCUCGUCGCaC-CCgGCUCGGc -3'
miRNA:   3'- -CCuGCGCGAGCAGUG-GcGG-CGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 11079 0.69 0.291622
Target:  5'- cGGCGCGCUggagCGgcaCAUCGCCGCCUuggcagGAGg -3'
miRNA:   3'- cCUGCGCGA----GCa--GUGGCGGCGGG------CUC- -5'
31766 5' -61.7 NC_006938.1 + 45606 0.69 0.291622
Target:  5'- aGGACGCcaacaGCUaUGUgACCGCCGCCUu-- -3'
miRNA:   3'- -CCUGCG-----CGA-GCAgUGGCGGCGGGcuc -5'
31766 5' -61.7 NC_006938.1 + 18732 0.69 0.298525
Target:  5'- cGAUGCGCaUUGagugaUUGCCGCCaGCCUGAGg -3'
miRNA:   3'- cCUGCGCG-AGC-----AGUGGCGG-CGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 19713 0.69 0.302728
Target:  5'- aGGACcCGC-CGgacccggaccagcCACCGCUGCCCGAc -3'
miRNA:   3'- -CCUGcGCGaGCa------------GUGGCGGCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 4397 0.69 0.305555
Target:  5'- -cACGCGCgacaUCGaccugcUCACCGCUGCCCuGGGc -3'
miRNA:   3'- ccUGCGCG----AGC------AGUGGCGGCGGG-CUC- -5'
31766 5' -61.7 NC_006938.1 + 50100 0.69 0.312711
Target:  5'- aGGcCGCGaUCGUCGCCGCCGa--GGGu -3'
miRNA:   3'- -CCuGCGCgAGCAGUGGCGGCgggCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.