miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31766 5' -61.7 NC_006938.1 + 205 0.67 0.408337
Target:  5'- uGGGCGaccgGCUC---GCCGCCGCCCu-- -3'
miRNA:   3'- -CCUGCg---CGAGcagUGGCGGCGGGcuc -5'
31766 5' -61.7 NC_006938.1 + 4397 0.69 0.305555
Target:  5'- -cACGCGCgacaUCGaccugcUCACCGCUGCCCuGGGc -3'
miRNA:   3'- ccUGCGCG----AGC------AGUGGCGGCGGG-CUC- -5'
31766 5' -61.7 NC_006938.1 + 6344 0.67 0.391176
Target:  5'- cGGugGCGguCUCGUCGCUGUCcacgaGCCgGAc -3'
miRNA:   3'- -CCugCGC--GAGCAGUGGCGG-----CGGgCUc -5'
31766 5' -61.7 NC_006938.1 + 10689 0.69 0.319994
Target:  5'- aGGGCGCaaucCUCGcCACCGagCGCCUGAc -3'
miRNA:   3'- -CCUGCGc---GAGCaGUGGCg-GCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 10727 0.68 0.374492
Target:  5'- uGGaACGUGg-CGUUGCUGCCGUCCGuGg -3'
miRNA:   3'- -CC-UGCGCgaGCAGUGGCGGCGGGCuC- -5'
31766 5' -61.7 NC_006938.1 + 11079 0.69 0.291622
Target:  5'- cGGCGCGCUggagCGgcaCAUCGCCGCCUuggcagGAGg -3'
miRNA:   3'- cCUGCGCGA----GCa--GUGGCGGCGGG------CUC- -5'
31766 5' -61.7 NC_006938.1 + 11622 0.7 0.252813
Target:  5'- cGGGCGgcacCGC-CGagccCACCGCCGCCUGAc -3'
miRNA:   3'- -CCUGC----GCGaGCa---GUGGCGGCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 12791 0.73 0.169869
Target:  5'- aGGACGgagcggaGCUCGUCGCCGCgcagUGCCCcGGa -3'
miRNA:   3'- -CCUGCg------CGAGCAGUGGCG----GCGGGcUC- -5'
31766 5' -61.7 NC_006938.1 + 15212 1.09 0.000361
Target:  5'- aGGACGCGCUCGUCACCGCCGCCCGAGc -3'
miRNA:   3'- -CCUGCGCGAGCAGUGGCGGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 15528 0.67 0.382774
Target:  5'- uGAUGC---CGUC-CgCGCCGCCCGAGg -3'
miRNA:   3'- cCUGCGcgaGCAGuG-GCGGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 16990 0.66 0.453224
Target:  5'- cGGACGacgaGUUCGccauUCGCaaGCUGCUCGAGg -3'
miRNA:   3'- -CCUGCg---CGAGC----AGUGg-CGGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 17181 0.66 0.481409
Target:  5'- cGGAUGagguaGUcgaUCG-CACCGCCGUCCGc- -3'
miRNA:   3'- -CCUGCg----CG---AGCaGUGGCGGCGGGCuc -5'
31766 5' -61.7 NC_006938.1 + 18256 0.66 0.471917
Target:  5'- aGGGCcacuGCGag-GUgACCGCCGCCCuGGGc -3'
miRNA:   3'- -CCUG----CGCgagCAgUGGCGGCGGG-CUC- -5'
31766 5' -61.7 NC_006938.1 + 18732 0.69 0.298525
Target:  5'- cGAUGCGCaUUGagugaUUGCCGCCaGCCUGAGg -3'
miRNA:   3'- cCUGCGCG-AGC-----AGUGGCGG-CGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 19713 0.69 0.302728
Target:  5'- aGGACcCGC-CGgacccggaccagcCACCGCUGCCCGAc -3'
miRNA:   3'- -CCUGcGCGaGCa------------GUGGCGGCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 26414 0.69 0.325167
Target:  5'- uGGCGCGaCUCGUuccacaaucucuggCACuCGCCGaCCGAGu -3'
miRNA:   3'- cCUGCGC-GAGCA--------------GUG-GCGGCgGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 28074 0.68 0.366333
Target:  5'- aGAUGCGCUgGcgCACC-CgGCCCGAc -3'
miRNA:   3'- cCUGCGCGAgCa-GUGGcGgCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 28823 0.66 0.481409
Target:  5'- cGACGCGCacgGUCAgUGCCucGCCUGAc -3'
miRNA:   3'- cCUGCGCGag-CAGUgGCGG--CGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 30016 0.73 0.176923
Target:  5'- cGGACGCGguaucugguCUCGUCGCCGacguggucuucagCGUCCGAGu -3'
miRNA:   3'- -CCUGCGC---------GAGCAGUGGCg------------GCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 30254 0.7 0.27819
Target:  5'- cGGCGCGCUUGUCGgCGCgUGUCCa-- -3'
miRNA:   3'- cCUGCGCGAGCAGUgGCG-GCGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.