miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31766 5' -61.7 NC_006938.1 + 37500 0.66 0.439472
Target:  5'- uGGACaagauccccgaGCUCGagGCCGCCGCCgcuggcaagcuggaCGAGg -3'
miRNA:   3'- -CCUGcg---------CGAGCagUGGCGGCGG--------------GCUC- -5'
31766 5' -61.7 NC_006938.1 + 39276 0.66 0.434942
Target:  5'- uGGAgGCGCUUGUUGCCGUCcaugaGCagCGGGu -3'
miRNA:   3'- -CCUgCGCGAGCAGUGGCGG-----CGg-GCUC- -5'
31766 5' -61.7 NC_006938.1 + 39858 0.74 0.153325
Target:  5'- aGGGCGCGCUCGagCAUCucggccauGCCGCCCu-- -3'
miRNA:   3'- -CCUGCGCGAGCa-GUGG--------CGGCGGGcuc -5'
31766 5' -61.7 NC_006938.1 + 41917 0.7 0.282834
Target:  5'- -cGCGCGCggcccacgucgcccUgGUCACCGCCGUCCa-- -3'
miRNA:   3'- ccUGCGCG--------------AgCAGUGGCGGCGGGcuc -5'
31766 5' -61.7 NC_006938.1 + 45606 0.69 0.291622
Target:  5'- aGGACGCcaacaGCUaUGUgACCGCCGCCUu-- -3'
miRNA:   3'- -CCUGCG-----CGA-GCAgUGGCGGCGGGcuc -5'
31766 5' -61.7 NC_006938.1 + 46702 0.7 0.284843
Target:  5'- aGGuCGCGCUCGUCGCaC-CCgGCUCGGc -3'
miRNA:   3'- -CCuGCGCGAGCAGUG-GcGG-CGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 46881 0.72 0.197676
Target:  5'- gGGACGaGCUCcUCACacuguuccaGCCGCCUGGGa -3'
miRNA:   3'- -CCUGCgCGAGcAGUGg--------CGGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 46984 0.7 0.271661
Target:  5'- uGGGCGCGC--GUCACCGUgCGCCacaCGGGu -3'
miRNA:   3'- -CCUGCGCGagCAGUGGCG-GCGG---GCUC- -5'
31766 5' -61.7 NC_006938.1 + 49528 0.67 0.382774
Target:  5'- cGGACGCGaUUGUUccccUCGCgGCCCGAu -3'
miRNA:   3'- -CCUGCGCgAGCAGu---GGCGgCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 49993 0.66 0.462521
Target:  5'- cGGcCGCGCUCGguccaACUGgaUCGCCCGuGu -3'
miRNA:   3'- -CCuGCGCGAGCag---UGGC--GGCGGGCuC- -5'
31766 5' -61.7 NC_006938.1 + 50100 0.69 0.312711
Target:  5'- aGGcCGCGaUCGUCGCCGCCGa--GGGu -3'
miRNA:   3'- -CCuGCGCgAGCAGUGGCGGCgggCUC- -5'
31766 5' -61.7 NC_006938.1 + 50571 0.67 0.382774
Target:  5'- gGGugGCcaGUUCuugggGUCACgaGaCCGCCCGAGg -3'
miRNA:   3'- -CCugCG--CGAG-----CAGUGg-C-GGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 51013 0.71 0.240855
Target:  5'- cGGCGCGUUCGaCGCUGCCa-CCGGGg -3'
miRNA:   3'- cCUGCGCGAGCaGUGGCGGcgGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 51532 0.71 0.213018
Target:  5'- cGGCGCGUUCaUCgagaucgcaACCGCCGCCauCGAGg -3'
miRNA:   3'- cCUGCGCGAGcAG---------UGGCGGCGG--GCUC- -5'
31766 5' -61.7 NC_006938.1 + 51942 0.74 0.153325
Target:  5'- cGGugG-GCUCGgCGgUGCCGCCCGAu -3'
miRNA:   3'- -CCugCgCGAGCaGUgGCGGCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 55406 0.75 0.12786
Target:  5'- cGGCGCGCUCGcCGCagGCgGCCUGGGc -3'
miRNA:   3'- cCUGCGCGAGCaGUGg-CGgCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 57069 0.69 0.312711
Target:  5'- -aGCGCGCUCGgCAUUGCCGUcuucgUCGAGc -3'
miRNA:   3'- ccUGCGCGAGCaGUGGCGGCG-----GGCUC- -5'
31766 5' -61.7 NC_006938.1 + 58190 0.67 0.417093
Target:  5'- cGugGCGCUCGUCgggucucccacgACCaaCGUCUGGGa -3'
miRNA:   3'- cCugCGCGAGCAG------------UGGcgGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 60916 0.66 0.432236
Target:  5'- cGGAC-C-CUCGUCGCCGUgGaggccgcacucgauCCCGAGg -3'
miRNA:   3'- -CCUGcGcGAGCAGUGGCGgC--------------GGGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.