Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31766 | 5' | -61.7 | NC_006938.1 | + | 4397 | 0.69 | 0.305555 |
Target: 5'- -cACGCGCgacaUCGaccugcUCACCGCUGCCCuGGGc -3' miRNA: 3'- ccUGCGCG----AGC------AGUGGCGGCGGG-CUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 19713 | 0.69 | 0.302728 |
Target: 5'- aGGACcCGC-CGgacccggaccagcCACCGCUGCCCGAc -3' miRNA: 3'- -CCUGcGCGaGCa------------GUGGCGGCGGGCUc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 18732 | 0.69 | 0.298525 |
Target: 5'- cGAUGCGCaUUGagugaUUGCCGCCaGCCUGAGg -3' miRNA: 3'- cCUGCGCG-AGC-----AGUGGCGG-CGGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 45606 | 0.69 | 0.291622 |
Target: 5'- aGGACGCcaacaGCUaUGUgACCGCCGCCUu-- -3' miRNA: 3'- -CCUGCG-----CGA-GCAgUGGCGGCGGGcuc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 11079 | 0.69 | 0.291622 |
Target: 5'- cGGCGCGCUggagCGgcaCAUCGCCGCCUuggcagGAGg -3' miRNA: 3'- cCUGCGCGA----GCa--GUGGCGGCGGG------CUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 46702 | 0.7 | 0.284843 |
Target: 5'- aGGuCGCGCUCGUCGCaC-CCgGCUCGGc -3' miRNA: 3'- -CCuGCGCGAGCAGUG-GcGG-CGGGCUc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 41917 | 0.7 | 0.282834 |
Target: 5'- -cGCGCGCggcccacgucgcccUgGUCACCGCCGUCCa-- -3' miRNA: 3'- ccUGCGCG--------------AgCAGUGGCGGCGGGcuc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 30254 | 0.7 | 0.27819 |
Target: 5'- cGGCGCGCUUGUCGgCGCgUGUCCa-- -3' miRNA: 3'- cCUGCGCGAGCAGUgGCG-GCGGGcuc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 46984 | 0.7 | 0.271661 |
Target: 5'- uGGGCGCGC--GUCACCGUgCGCCacaCGGGu -3' miRNA: 3'- -CCUGCGCGagCAGUGGCG-GCGG---GCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 11622 | 0.7 | 0.252813 |
Target: 5'- cGGGCGgcacCGC-CGagccCACCGCCGCCUGAc -3' miRNA: 3'- -CCUGC----GCGaGCa---GUGGCGGCGGGCUc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 51013 | 0.71 | 0.240855 |
Target: 5'- cGGCGCGUUCGaCGCUGCCa-CCGGGg -3' miRNA: 3'- cCUGCGCGAGCaGUGGCGGcgGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 51532 | 0.71 | 0.213018 |
Target: 5'- cGGCGCGUUCaUCgagaucgcaACCGCCGCCauCGAGg -3' miRNA: 3'- cCUGCGCGAGcAG---------UGGCGGCGG--GCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 46881 | 0.72 | 0.197676 |
Target: 5'- gGGACGaGCUCcUCACacuguuccaGCCGCCUGGGa -3' miRNA: 3'- -CCUGCgCGAGcAGUGg--------CGGCGGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 30016 | 0.73 | 0.176923 |
Target: 5'- cGGACGCGguaucugguCUCGUCGCCGacguggucuucagCGUCCGAGu -3' miRNA: 3'- -CCUGCGC---------GAGCAGUGGCg------------GCGGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 12791 | 0.73 | 0.169869 |
Target: 5'- aGGACGgagcggaGCUCGUCGCCGCgcagUGCCCcGGa -3' miRNA: 3'- -CCUGCg------CGAGCAGUGGCG----GCGGGcUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 39858 | 0.74 | 0.153325 |
Target: 5'- aGGGCGCGCUCGagCAUCucggccauGCCGCCCu-- -3' miRNA: 3'- -CCUGCGCGAGCa-GUGG--------CGGCGGGcuc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 51942 | 0.74 | 0.153325 |
Target: 5'- cGGugG-GCUCGgCGgUGCCGCCCGAu -3' miRNA: 3'- -CCugCgCGAGCaGUgGCGGCGGGCUc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 55406 | 0.75 | 0.12786 |
Target: 5'- cGGCGCGCUCGcCGCagGCgGCCUGGGc -3' miRNA: 3'- cCUGCGCGAGCaGUGg-CGgCGGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 15212 | 1.09 | 0.000361 |
Target: 5'- aGGACGCGCUCGUCACCGCCGCCCGAGc -3' miRNA: 3'- -CCUGCGCGAGCAGUGGCGGCGGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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